DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrx-1 and slit3

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:NP_001072738.1 Gene:slit3 / 780195 XenbaseID:XB-GENE-991050 Length:1519 Species:Xenopus tropicalis


Alignment Length:927 Identity:187/927 - (20%)
Similarity:275/927 - (29%) Gaps:348/927 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   453 ISSIT--SFCRLVT-----VVDDVYTDHSHIAGKFTMLSSSRVYVGGAVNPRALLGARVHTNFVG 510
            |::||  :|..||:     ::.:.:..:.|:|.....|...||..|   |||             
 Frog   637 ITTITPGAFNTLVSLSTINLLSNPFNCNCHLAWLGKWLRKKRVVSG---NPR------------- 685

  Fly   511 C-----LRKV--------EFSADTLNLNLIDLAKSGSKLIQVAGNLEYQC--------------- 547
            |     |:::        :|:.|                    ||.|..|               
 Frog   686 CQKPYFLKEIPIQDVAIQDFTCD--------------------GNEESSCLPASHCPEQCTCVES 730

  Fly   548 ------------PSGDPQDPVTFTTRESHLVLPPWETGKQSSISFKFRT---KEPNGIIVLA--T 595
                        |...|:|........:||...|.|..     |||..|   ...|.|.||:  |
 Frog   731 VVRCGNQGLRTLPKNIPKDVTELYLEGNHLTSVPKEIS-----SFKHLTLIDLSNNSISVLSNYT 790

  Fly   596 GSKQPRAKNPVL-------IAIELLNGHIYIHLDLGSGASKVRASRRRVDDGDWHDLILRRNGRD 653
            .|...:....:|       |.:...||              :::.|           :|..:|  
 Frog   791 FSNVTQLSTLILSYNRLRCIPVHAFNG--------------LKSLR-----------VLTLHG-- 828

  Fly   654 AKVSVDGVWNDFRTPGDGTILELDGHMYLG-GVGPAY--NSVSWPAAIWTATLRQ-GFVGCLRDL 714
                     ||..|..||:..:|....:|. |..|.|  .::.|.:....|..:: |...|....
 Frog   829 ---------NDISTVPDGSFSDLTSLSHLALGTNPLYCDCNLRWLSEWVKAGYKEPGIARCSGPE 884

  Fly   715 VLSGKAIDIAAFARVQDSASVKPSCHVQANVCNGNPCLNGGTCLE------------GWNRPICD 767
            .::.:.:......:.|....|..:...:.|.|..|||.|.|||..            |:....||
 Frog   885 DMADRLLLTTPTQKFQCKGPVDMNIASKCNPCFSNPCKNNGTCNSDPVELYRCTCPFGFKGRDCD 949

  Fly   768 -----C-SATLYGGPTCGRELATLAFNGSQHMTIWLGNGQGTKTQTEELVIRFKTSRPAGLLLLT 826
                 | .|....|.||....|               |..|           |..|.|.|.    
 Frog   950 IPINACIQAPCENGGTCHTNEA---------------NKDG-----------FSCSCPLGF---- 984

  Fly   827 SAESN----SPDRLEIALVAGRVRASVRLSDREKNLLAGQSVLNDNNWHTIRFSRRASNLRLQVD 887
              |..    :||..|                             ||:         ..|....||
 Frog   985 --EGEKCGINPDDCE-----------------------------DND---------CENFATCVD 1009

  Fly   888 G-------APP-VRGMLSETILGRHSTMEIRSVHLGGLFHAEEEIQMTSTMPNFVGQ-------- 936
            |       .|| ..|.|.:.::. |...|:..........:.::..|....|.||||        
 Frog  1010 GINNYICLCPPNYTGELCDEVID-HCVPELNPCLHDSKCISTDKGYMCECSPGFVGQHCETNEDD 1073

  Fly   937 -MQGLVFNGQRYLD---------------IVKSLGPELSAL---PSATFKL-------------T 969
             ......:|.:.:|               :...:.|.:..|   |...::.             .
 Frog  1074 CANHKCRHGAQCIDDIGGYTCVCPPGFSGLFCEISPPMVLLQTSPCDNYECQNKAQCIVVQQEPV 1138

  Fly   970 ARFVNSPAGQPYH---AATFRSKHSYVGLAMLKAYNSISIDFRFKTVEPNGLLVFNGGRRNDFVA 1031
            .|.:...|||...   ...|..|.|||.|:........:|..:..|.:.||:|::.|.  ||.:|
 Frog  1139 CRCLAGFAGQRCEKLITVNFVGKDSYVELSGSSVRPQANISLQVATDKDNGILLYKGD--NDPLA 1201

  Fly  1032 VELVNGHIHYTFD-LGDGPVTMRDKSRIHMNDNRWHQVSIRRPGPKTHTLTVDDSF-EIISLTGN 1094
            :||..||:...:| |...|.|:.....|  ||..:|.|.:.... ::.:|.||... :.:.....
 Frog  1202 LELYQGHVRLIYDTLNSPPTTVYSVETI--NDGLFHTVELVMLN-QSLSLVVDKGLPKSLGKLQK 1263

  Fly  1095 NMHLELAGILYIGGVFKDMYSKLPASISSRS-----GFEGCLASL-------DLGDASPSLTSDA 1147
            ...|.|...||:||:  ...|.:| |:..|:     ||.||:..:       |..|..|  .|..
 Frog  1264 QPSLNLNTPLYLGGI--PPASGVP-SMRQRTDHIPIGFNGCIHDVRINNELQDFRDLPP--VSIG 1323

  Fly  1148 VVPSSLVVSGCEGPTKCS-----------------------------QNACAN----RGNCVQQW 1179
            |.|      ||:....|.                             .|.|.|    .|.||...
 Frog  1324 VFP------GCKSCNICKHGSCRSMEKTSVICECFPGWTGSMCDQEIDNTCINHKCIHGECVAAN 1382

  Fly  1180 NAYACECDMTSYTGPTC 1196
            |||.|:| ...|||..|
 Frog  1383 NAYMCKC-AEGYTGQYC 1398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058
EGF_CA 311..347 CDD:238011
Laminin_G_2 386..517 CDD:280389 17/83 (20%)
LamG 555..716 CDD:238058 35/176 (20%)
EGF 746..777 CDD:278437 14/48 (29%)
Laminin_G_2 814..945 CDD:280389 26/151 (17%)
LamG 988..1136 CDD:238058 44/161 (27%)
EGF 1164..1195 CDD:278437 15/63 (24%)
Laminin_G_2 1233..1356 CDD:280389
slit3NP_001072738.1 LRRNT 29..60 CDD:214470
LRR_8 57..117 CDD:290566
LRR_4 60..97 CDD:289563
leucine-rich repeat 60..82 CDD:275380
LRR_RI <83..216 CDD:238064
leucine-rich repeat 83..106 CDD:275380
LRR_8 105..165 CDD:290566
leucine-rich repeat 107..130 CDD:275380
leucine-rich repeat 131..154 CDD:275380
LRR_8 155..213 CDD:290566
leucine-rich repeat 155..178 CDD:275380
leucine-rich repeat 179..202 CDD:275380
leucine-rich repeat 203..305 CDD:275380
TPKR_C2 211..260 CDD:301599
LRRNT 276..307 CDD:214470
LRR_8 307..363 CDD:290566
leucine-rich repeat 307..328 CDD:275380
LRR_4 327..367 CDD:289563
leucine-rich repeat 329..352 CDD:275380
LRR_8 351..435 CDD:290566
leucine-rich repeat 353..373 CDD:275380
leucine-rich repeat 377..400 CDD:275380
leucine-rich repeat 401..422 CDD:275380
leucine-rich repeat 425..516 CDD:275380
TPKR_C2 433..>463 CDD:301599
LRRNT 501..531 CDD:214470
LRR_4 533..570 CDD:289563
leucine-rich repeat 533..554 CDD:275380
LRR_8 553..613 CDD:290566
leucine-rich repeat 555..578 CDD:275380
leucine-rich repeat 579..602 CDD:275380
LRR_8 602..661 CDD:290566 6/23 (26%)
leucine-rich repeat 603..626 CDD:275380
leucine-rich repeat 627..650 CDD:275380 5/12 (42%)
leucine-rich repeat 651..741 CDD:275380 17/125 (14%)
LRRCT 659..708 CDD:214507 12/64 (19%)
LRRNT 720..752 CDD:214470 3/31 (10%)
leucine-rich repeat 742..772 CDD:275380 9/34 (26%)
LRR_8 771..831 CDD:290566 16/95 (17%)
leucine-rich repeat 773..796 CDD:275380 7/22 (32%)
LRR_4 795..836 CDD:289563 10/76 (13%)
leucine-rich repeat 797..820 CDD:275380 4/36 (11%)
leucine-rich repeat 821..842 CDD:275380 8/42 (19%)
LRRCT 853..902 CDD:214507 7/48 (15%)
EGF 916..947 CDD:278437 9/30 (30%)
EGF_CA 952..989 CDD:238011 13/68 (19%)
EGF_CA 994..1027 CDD:238011 11/70 (16%)
EGF_CA 1031..1068 CDD:238011 8/37 (22%)
EGF_CA 1070..1106 CDD:238011 2/35 (6%)
LamG 1155..1308 CDD:238058 45/160 (28%)
GHB_like 1454..1517 CDD:304424
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.