DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrx-1 and CG34370

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:NP_001097404.2 Gene:CG34370 / 5740565 FlyBaseID:FBgn0085399 Length:952 Species:Drosophila melanogaster


Alignment Length:635 Identity:121/635 - (19%)
Similarity:203/635 - (31%) Gaps:202/635 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 SQNSFYTFRKWYTGLNGTLELEFKTEQPNGLVLYTDDGGTYDFFELKLVEGALRLRYNLGGGAQI 174
            |:..|.:...||.. |.:.....|......:.||      :..|.:..:|..: |:|. |...:.
  Fly   396 SEGIFLSIAHWYPP-NTSCSYHIKGHVGEIVRLY------FPSFRINRIESPI-LKYE-GDCGES 451

  Fly   175 ITVGRELHDG-HWHKVQVLRNDEQT-SLIVDGVSQQRSTKGKEFQF----GKFASNSDVYVGGMP 233
            :|:    :|. |....::::....| |..::.|....::.....||    |.: |.|.:|.....
  Fly   452 LTI----YDSDHADPARIIKTFCDTFSRPMEKVDFVSTSPSLYVQFDSKTGSY-SGSSLYYWAHY 511

  Fly   234 NWYSSKLALLALPSVIFEP----------RFRGAIRNLVYADQPGGSTRRQEIKQQRDIKCGDVP 288
            :::::......:|:.:.:.          |.|..:.:|:: .:.|||               ||.
  Fly   512 DFFNNTRFGDPVPNTLCDEVMYAWKHPGGRLRSPLNSLIF-KRTGGS---------------DVR 560

  Fly   289 CDHGELPARERPLRGVRGGNT---------TDACERNDPCQHGGICISTDSGPICECRNLEYDGQ 344
            |.:..:..|....|.:...|:         ::||.|   |....:    |...|.|.|:...:..
  Fly   561 CQYKFVTDRRLYARAIIEVNSVSFKELPYNSNACTR---CHEERV----DKLVIWEERDKYQNNL 618

  Fly   345 YCEKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFYT---GHGTDYLN 406
            .|..:..|     |..:.:| ...|...|.||..|.||:.||  :.||.|...|   .||.....
  Fly   619 ACFCDNIP-----RAVRVIS-SADQMNLEMIVQGQHAITSYF--KNPNPLFEATYEFAHGPLCGP 675

  Fly   407 LAL---RDGGV----SLTMGLANGKQ---EMHIKPSKVRFDDHQWH-KVTVHRRIQEISSITSFC 460
            :.|   .||.:    ...:.:.:|..   |.|.:..|.     .|. ||...|.:          
  Fly   676 ITLGPSPDGELVFPYKKALAMVSGPMAPPEHHYRREKC-----IWELKVAAQRDL---------- 725

  Fly   461 RLVTVVDDVYTDHSHIAGKFTMLSSSRVYVGGAVNPRALLGARVHTNFVGCLRKVEFSADTLNLN 525
             .:.:....:.|.|..:.|.      .||:.|.:.||          ||.|...:..:.|...|.
  Fly   726 -WLNLEKARFADRSCDSAKI------EVYLAGRLEPR----------FVVCPENISLARDLPILT 773

  Fly   526 LIDLAKSGSKLIQVAGNLEYQCPSGDPQDPVTFTTRESHLVLPPWETGKQSSISFKFRTKEPNGI 590
            ..:|..:|:                                                 .:||..:
  Fly   774 TAELGATGA-------------------------------------------------DQEPLPV 789

  Fly   591 IVLATGSKQPRAKNPVLIAIELLNGHIYIHLDLGSGASKVRASRRRVDDGDWHDLILRRNGRDAK 655
            ::..||..||......|:..||      .||.             |..||.....:|:..|    
  Fly   790 LIQYTGDGQPGRNIFRLVWTEL------FHLP-------------RNPDGSLAASLLQDGG---- 831

  Fly   656 VSVDGVWNDFRTPGDGTILELDGHMYLGGVGPAYNSVSWPAAIWTATLRQ 705
                   .|||.||| |.:.:..|:...|:      .:.|....|:||.|
  Fly   832 -------CDFRCPGD-TEVCIPKHLLCNGI------ANCPNVTHTSTLSQ 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058 29/168 (17%)
EGF_CA 311..347 CDD:238011 8/35 (23%)
Laminin_G_2 386..517 CDD:280389 29/144 (20%)
LamG 555..716 CDD:238058 30/151 (20%)
EGF 746..777 CDD:278437
Laminin_G_2 814..945 CDD:280389
LamG 988..1136 CDD:238058
EGF 1164..1195 CDD:278437
Laminin_G_2 1233..1356 CDD:280389
CG34370NP_001097404.2 CUB 88..195 CDD:238001
CUB 244..363 CDD:238001
CUB 407..509 CDD:238001 22/115 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444880
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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