DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrx-1 and lamb2l

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:XP_005162178.1 Gene:lamb2l / 553337 ZFINID:ZDB-GENE-030131-4205 Length:1836 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058
EGF_CA 311..347 CDD:238011
Laminin_G_2 386..517 CDD:280389
LamG 555..716 CDD:238058
EGF 746..777 CDD:278437
Laminin_G_2 814..945 CDD:280389
LamG 988..1136 CDD:238058
EGF 1164..1195 CDD:278437
Laminin_G_2 1233..1356 CDD:280389
lamb2lXP_005162178.1 Laminin_N 41..266 CDD:306548
EGF_Lam 267..320 CDD:238012
EGF_Lam 332..384 CDD:238012
Laminin_EGF 395..452 CDD:278482
EGF_Lam 454..505 CDD:238012
EGF_Lam 506..>545 CDD:238012
EGF_Lam 816..861 CDD:214543
Laminin_EGF 864..912 CDD:278482
Laminin_EGF 910..957 CDD:278482
Laminin_EGF 960..1016 CDD:278482
Laminin_EGF 1019..1063 CDD:278482
Laminin_EGF <1089..1129 CDD:278482
Laminin_EGF 1122..1175 CDD:278482
Laminin_EGF 1175..1215 CDD:278482
SMC_N <1243..1826 CDD:330553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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