DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrx-1 and eys

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:NP_001027571.3 Gene:eys / 3771890 FlyBaseID:FBgn0031414 Length:2176 Species:Drosophila melanogaster


Alignment Length:1330 Identity:271/1330 - (20%)
Similarity:448/1330 - (33%) Gaps:468/1330 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 KCGDVPCDHGELPARERPLRGVRGGNTTDACERNDPCQHGGICISTDSGPICECRNLEYDGQYCE 347
            |.|||.|              ::.|           |.:||.|::|..|..|.|| .:..|..||
  Fly  1016 KAGDVDC--------------IKLG-----------CYNGGTCVTTSEGSRCVCR-FDRQGPLCE 1054

  Fly   348 KEKAPSEATFRGTQFLSY----DLGQTGAEPIVSAQDA-----ISFYFRTRQPNGLLFYTG---- 399
            .......|.|.|..::|:    |:|  |.|.:    ||     |....|||..|||:....    
  Fly  1055 LPIIIRNAAFSGDSYVSHRIYKDIG--GHESL----DAVLPMHIQLKVRTRATNGLIMLAAAQGT 1113

  Fly   400 HGTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQWHKVTVHRRIQEISSITSFCRLVT 464
            .|..|:.|.|:.|  .:....:.|.|.|.:  |::....:..|::|:...: :.|...:.|....
  Fly  1114 KGGHYMALFLQKG--LMQFQFSCGLQTMLL--SELETPVNTGHEITIRAEL-DFSRNYTHCNASL 1173

  Fly   465 VVDD------------------VYTDHSHIAGKFTMLSSSRVYVGGAVNPRALLG-------ARV 504
            :|:|                  ::|..:        :.::.:::|||  |:|.:|       |:.
  Fly  1174 LVNDTLAMSGDQPTWLKLLPPRLHTPEA--------ILNTWLHLGGA--PQAPIGLIIELPPAQS 1228

  Fly   505 HTNFVGCLRKV-------EFSADTLN-------------------------LNLIDLAKSGSKLI 537
            .:.|.|||..:       |...|.|:                         :...||.::|.|  
  Fly  1229 GSGFTGCLHTLRINGQAREIFGDALDGFGITECGSLACLSSPCRNGAACIKIETNDLDENGEK-- 1291

  Fly   538 QVAGNLEYQCPSG-------------DP--------QDPVT-------------FTTRESHLVLP 568
              |...:.:||:|             :|        |.|.:             :......:.||
  Fly  1292 --AEKWKCKCPTGYMGPTCEISVCEDNPCQYGGTCVQFPGSGYLCLCPLGKHGHYCEHNLEVALP 1354

  Fly   569 PWE---TGKQS--------------SISFKFRTKEPNGIIVLA----TGSKQPRAKNPVLIAIEL 612
            .:.   .|..|              .:|||...:..:.|.:||    :|....::.:   :|:..
  Fly  1355 SFSGSVNGLSSFVAYTVPIPLEYSLELSFKILPQTMSQISLLAFFGQSGYHDEKSDH---LAVSF 1416

  Fly   613 LNGHIYIHLDLGSGASKV--------RASRRRVDDGDWHDLILRRNGRDAKVSVDGVWN-DFRTP 668
            :.|:|.:..:||:|..::        |....||.    :::.:.|.||.|.:||||.:| ..|:|
  Fly  1417 IQGYIMLTWNLGAGPRRIFTQKPIDFRLDAPRVP----YEIKVGRIGRQAWLSVDGKFNITGRSP 1477

  Fly   669 GDGTILELDGHMYLGGVGPAYNSVSWPAAIWTATLRQGFVGCLRDLVLSGKAIDIAAFARVQDSA 733
            |.|:.:::...:||||    :...::........|..||.||:.|:.|....:.:.    :|::.
  Fly  1478 GSGSRMDVLPILYLGG----HEIANFNTLPHDLPLHSGFQGCIYDVQLKAGQVTVP----LQETR 1534

  Fly   734 SVK---------PSCHVQANVCNGNPCLNGGT-----CLEGWNRPIC-----DCSA---TLYGGP 776
            .|:         ..||..|...:| .||..|.     |.|||..|:|     .|.:   ..|...
  Fly  1535 GVRGRGVGQCGTRECHRHACQHDG-ACLQHGATFTCICQEGWYGPLCAQPTNPCDSFNNKCYEDA 1598

  Fly   777 TCGRELATLAFNGSQHMTIWLGNGQGTKTQTEELVIRFKTSRPAGLLLLTSAESNSPDRLEIALV 841
            ||                :.|.||             ::...|.|                    
  Fly  1599 TC----------------VPLVNG-------------YECDCPVG-------------------- 1614

  Fly   842 AGRVRASVRLSDREKNLLAGQSVLNDNNWHTIRFSRRASNLRLQVDGAPPVRGMLSETILGRHST 906
                                               |...|..      ..:|.:...::.||.|.
  Fly  1615 -----------------------------------RTGKNCE------EVIRSLSDVSLTGRRSY 1638

  Fly   907 MEIRSVHL--GGLFHAEEEIQMTSTMPNFVGQMQGLVFNGQRYLDIVKSL-GPELSALPSATFKL 968
            :.:|..:|  ||.....:..||.|                  |.:..|.| .|:....||:.|.:
  Fly  1639 LAVRWPYLYDGGDKLGAKRSQMVS------------------YRNFTKKLMPPKPITTPSSHFVM 1685

  Fly   969 TARFVNSPAGQPYHAATFRSKHSYVGLAMLKAYNS------ISIDFRFKTVEPNGLLVFNGGRRN 1027
              :.:|....|       || .|.|.|...|::..      ..|:|:.:.:...|||::.|...|
  Fly  1686 --KLLNEVEKQ-------RS-FSPVPLMGSKSFEEHHRVQFFFIEFQLRPLSERGLLLYFGTLNN 1740

  Fly  1028 D------FVAVELVNGHIHYTFDLGDGPVTMRDKSRIHMNDNRWHQVSIRRPGPKTHTLTVDDSF 1086
            :      ||::.|..|.:.:........||:....|: :....||::.:.:.| :..||.|:.|.
  Fly  1741 NQDKKIGFVSLSLQGGVVEFRISGPSNHVTVVRSVRM-LAIGEWHKIKMAQRG-RWLTLWVEGSA 1803

  Fly  1087 EIISLTGNNMHLELAGILYIGGVFKDMYSKLPASISSRSG----FEGCLASLDL----------- 1136
            .........:.:|...:|||||: ||: ||||.  ::.||    |.||:..|.:           
  Fly  1804 SSALAPSAEVLVEPDSLLYIGGL-KDV-SKLPH--NAISGFPIPFRGCVRGLVVSGTRIVLNETN 1864

  Fly  1137 ----------------GDASPS---------LTSDAVVPSSLVVSGCEGPTKCSQNACANRGNCV 1176
                            ||:..|         |....:.|.......||....|....|.|.|.|:
  Fly  1865 IVESRNIRDCDGTACGGDSCESGGHCWLDEKLQPHCICPEYAKGDRCEYSETCKLIPCKNNGRCL 1929

  Fly  1177 QQ--------WNAYACECDMTSYTGPTCYDESIAYEFGNN---------------KGMVQYTFPE 1218
            :.        |..:.||..|:..|.|:..        ||:               :|...|..|.
  Fly  1930 RSGRCSCPNGWGGFYCEIAMSKPTTPSFR--------GNSYLILPPPRIPMKDKRRGPSLYVRPR 1986

  Fly  1219 NAQADTEEDNIALGFITTRPDAVLLRVESATTQDYMELEIVEGNIFMVYN-IGSV-DLPLGEIGT 1281
                  |...::|.|.|..||.:||..|...:: ::.|.:..|::.:..| :||. |........
  Fly  1987 ------EAIQVSLNFSTIEPDGLLLWSEHERSK-FLGLGLEAGHLKLASNLLGSTNDTVRAPASG 2044

  Fly  1282 KVNDNAYHVVRFQRKGGNATLQLD------------DYNVQALTPQS------HHSTVFNTMSNV 1328
            .:.|.|:|............||||            ..::.:.||:|      .:|:...|:|..
  Fly  2045 FIADGAWHWTSVLLDRSRLELQLDGEVIFTERLPEGGRSLGSTTPRSTLAGRRKNSSKEPTISYE 2109

  Fly  1329 QV---GG-----KFSRNGRNRIERPFAGVI 1350
            .|   ||     ..||..:.|...||.|.:
  Fly  2110 DVFYLGGFPNSDSVSRRTKGRFFDPFKGCL 2139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058
EGF_CA 311..347 CDD:238011 10/35 (29%)
Laminin_G_2 386..517 CDD:280389 33/166 (20%)
LamG 555..716 CDD:238058 44/203 (22%)
EGF 746..777 CDD:278437 12/43 (28%)
Laminin_G_2 814..945 CDD:280389 15/132 (11%)
LamG 988..1136 CDD:238058 44/163 (27%)
EGF 1164..1195 CDD:278437 10/38 (26%)
Laminin_G_2 1233..1356 CDD:280389 35/146 (24%)
eysNP_001027571.3 EGF_CA 184..218 CDD:238011
EGF_CA 220..256 CDD:238011
EGF_CA <270..298 CDD:238011
EGF_CA 301..336 CDD:238011
EGF 342..371 CDD:278437
EGF_CA 378..413 CDD:238011
Laminin_G_2 1096..1244 CDD:280389 33/162 (20%)
EGF_CA 1314..1346 CDD:238011 3/31 (10%)
LamG 1355..1521 CDD:238058 41/176 (23%)
EGF 1549..1578 CDD:278437 11/29 (38%)
EGF_CA 1585..1621 CDD:238011 11/119 (9%)
Laminin_G_2 1723..1856 CDD:280389 37/138 (27%)
LamG 1956..2144 CDD:238058 42/199 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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