DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrx-1 and stan

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:NP_001260871.1 Gene:stan / 36125 FlyBaseID:FBgn0024836 Length:3648 Species:Drosophila melanogaster


Alignment Length:1785 Identity:363/1785 - (20%)
Similarity:602/1785 - (33%) Gaps:531/1785 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 HSATYQDNYADAAM--------TARTRPSMDMDQQRNRNQAELRLLPAQRTSTSAF----ESP-- 55
            ||.|::....:|::        |..|..:.|.|..:|   ||:.......|..:..    |.|  
  Fly   460 HSPTFEAEQFEASIREGATVGSTVITLRATDQDIGKN---AEIEYGIEAVTDGAGLAQDQEMPIF 521

  Fly    56 --DLRFNKARRRRRSEQVPPVVVEYRRSYRVLIVSALLVSLAASFVTLSAGFQ---LDGSQN--- 112
              |.|......|...::      |...||.:|:.:|.|.|..:...|.:|..|   ||.:.|   
  Fly   522 RIDSRSGVISTRSSLDR------ETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQ 580

  Fly   113 ---SFYTFR----KW-------------------------YTGLNGTLELEFKTEQPNG------ 139
               ..||.:    :|                         |..:.|..:.:|..:..:|      
  Fly   581 FSERTYTVQVPEDQWGGTEDNTVAHIRATDADQGNNAAIRYAIIGGNTQSQFSIDSMSGDVSLVK 645

  Fly   140 -----------LVLYTDDGGTYD--------------------FFELKLVEGALR---LRYNL-- 168
                       ||:...|||:..                    |:..:..|..|.   :.||:  
  Fly   646 PLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPVGYNIIR 710

  Fly   169 --------GGGAQIITVGRELHDGHWHKVQVLRNDEQTSLIVD---GVSQQRSTKGKEFQFGKFA 222
                    |..|:|             ...:...|:...|.||   |..|......:|.| |:||
  Fly   711 VQAYDSDEGANAEI-------------TYSISERDDNFPLAVDPRTGWVQTIKPLDREEQ-GRFA 761

  Fly   223 SNSDVYVGGMPNWYSSKLALLALPSV-----IFEPRFRGAIRNLVYADQPGGS-----TRRQEIK 277
            .......||:|...:|...::.:..|     .|.|::..|   .|..|||.|:     |.....:
  Fly   762 FQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPKYYEA---NVGEDQPPGTPVTTVTATDPDE 823

  Fly   278 QQR---DIKCGD------VPCDHG----------ELPARERPLRGVRGGNTTDACERNDPCQ-HG 322
            ..|   :|..|:      :...:|          :....:|.|..|.   .||:..|:|... |.
  Fly   824 DSRLHYEITTGNTRGRFAITSQNGRGLITIAQSLDYKQEKRFLLTVA---ATDSGGRSDTATVHI 885

  Fly   323 GICISTDSGPICECRNLEYDGQYCEKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFR 387
            .|..:.:..||.|  |..|.....  |.||...|.........|:|       |:||  |::...
  Fly   886 NITDANNFAPIFE--NAPYSASVF--EDAPVGTTVLVVSATDSDVG-------VNAQ--ITYSLN 937

  Fly   388 TRQPNGL-------------LFYTGHGTD-------YLNLALRDGG---VSLTMGLANGKQEMHI 429
            ....|||             ...|....|       .|.:..:|||   :|.|..:..|..::: 
  Fly   938 EESINGLGSPDPFSINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVN- 1001

  Fly   430 KPSKVRFDDHQWHKVTVHRR--IQEISSITSFCRLVTVVDDVYTDHSHIAGKFTMLSSSRVYVGG 492
                   |:....|..:::.  :::....||..::.....||     .:.|:...|.|.|....|
  Fly  1002 -------DNAPAFKSPLYQASILEDALVGTSVIQVAASDPDV-----GLNGRIKYLLSDRDIEDG 1054

  Fly   493 A--VNPRALLGARVHTNFVGCLRKVEFSADTLNLNLIDLAKSGSKLIQVAGNLEYQCPSGDPQD- 554
            :  ::|.:   ..:.|| .|..|:   |....:|..|.:.|....|   :..:|.|....|..| 
  Fly  1055 SFVIDPTS---GTIRTN-KGLDRE---SVAVFHLTAIAVDKGSPPL---SSTVEVQIRLEDVNDS 1109

  Fly   555 PVTFTTRESHLVLPPWETGKQSSISFKFRTKEPNGIIVLATGSKQPRAKNPVLIAIELLNGHIYI 619
            |.||.:.:..|.:|               ...|.|.:|....:..|......::...::.|....
  Fly  1110 PPTFASDKITLYVP---------------ENSPVGSVVGEIHAHDPDEGVNAVVHYSIIGGDDSN 1159

  Fly   620 HLDLGSGASKVRASRRRVDDGDWH------DLILR------RNGRDAKVSVDGV----------- 661
            ...|.:.....||....:.:.|:.      :|::|      ||....::.|..|           
  Fly  1160 AFSLVTRPGSERAQLLTMTELDYESTRKRFELVVRAASPPLRNDAHIEILVTDVNDNAPVLRDFQ 1224

  Fly   662 --WNDFRTPGDGTILELDGHMYLGGVG--PAYNS-VSWPAAIWTATLRQGFVGCLR------DLV 715
              :|:||           .|...|.:|  ||::: ||  ..:....|.......||      .||
  Fly  1225 VIFNNFR-----------DHFPSGEIGRIPAFDADVS--DKLHYRILSGNNANLLRLNSSSGGLV 1276

  Fly   716 LSGKA-IDIAAFARVQDSAS-----VKPSCHVQANVCNGNPCLNGGTCL------EGWNRPICDC 768
            ||.:. .::..||.::.|.|     .|....:...:...:...|..|..      |.:..|:  .
  Fly  1277 LSPQLNTNVPKFATMEVSVSDGINEAKAIMQLSVRLITEDMLFNSVTVRLNEMTEEAFLSPL--L 1339

  Fly   769 SATLYGGPTCGRELATLAFNGSQHMTIWLGNGQGTKTQTEELVIRFKTSRPAGLLLLTSAESNSP 833
            :..|.|       ||.:.....:|:.:: .....|...:..|.:.|...||.    ::..|..:|
  Fly  1340 NFFLDG-------LAAIIPCPKEHIFVF-SIQDDTDVSSRILNVSFSARRPD----VSHEEFYTP 1392

  Fly   834 DRLEIALVAGRV----RASVRLSDREKNLLAGQSVLNDNNWHTIRFSRRASNLRLQVDGAPPVRG 894
            ..|:..:...|.    .|:|.:...:.||...:..||.....|:.....||..            
  Fly  1393 QYLQERVYLNRAILARLATVEVLPFDDNLCVREPCLNFEECLTVLKFGNASEF------------ 1445

  Fly   895 MLSETILGRHSTMEIRSVH----------LGGLFH--AEEEIQMTSTMPNFVG----QMQG---- 939
            :.|:|:|.|    .|..|:          .|...|  .:.|:.:..:.|...|    :.:|    
  Fly  1446 IHSDTVLFR----PIYPVNTFACSCPEGFTGSKEHYLCDTEVDLCYSDPCQNGGTCVRREGGYTC 1506

  Fly   940 ---LVFNGQRYLDIVKSLGPELSALPSATFK--LTARFVNSPAGQ--PYHA-----ATFRSKHSY 992
               ....||.....|..|.|    .||.|.:  |:. ..|.|:.|  ||.|     |....::|:
  Fly  1507 VCPSTHTGQNCETGVGHLRP----CPSETCEGGLSC-LSNYPSSQPPPYTATCELRARAFGRNSF 1566

  Fly   993 VGLAMLKAYNSISIDFRFKTVEPNGLLVFNG--GRRNDFVAVELVNGHIHYTFDLGDGPVTMRDK 1055
            :....||..:..::..||.||:.||||::||  ...:||:|:|:..||:.::|.|||....:...
  Fly  1567 LTFESLKQRHRFNLKLRFATVQENGLLLYNGRYNELHDFIALEIHEGHVSFSFSLGDHSERISVI 1631

  Fly  1056 SRIHMNDNRWHQVSIRRPGPKTHTLTVDDSFEIISLTGN-------------------------- 1094
            ....::|.:||||.:.... ::.||.:|:....|:|:|.                          
  Fly  1632 QEAKVSDGKWHQVEVVYLN-RSVTLVLDNCDTAIALSGQLGDRWSCANRTTLKLDKRCSLLTETC 1695

  Fly  1095 NMHLELAGILYIGGVFKDMYSKLPA--SISSRSGFEGCLASLDLGDASPSLTSDAVVPSSLVVSG 1157
            :..|:|.|.|.:||:     .::||  .:::|. |.||::.|.:.|....|.|  .|..:..::|
  Fly  1696 HRFLDLTGPLQVGGL-----PRIPAHFPVTNRD-FVGCISDLRIDDRFVDLNS--YVADNGTLAG 1752

  Fly  1158 CEGPTK---CSQNACANRGNCVQQWNAYACECDMTSYTGPTCYDESIA-YEFGNNKGM------- 1211
            |  |.|   |....|.|.|.|.:.|..|:|||. ..|.|.:|.|...| :.|..:..:       
  Fly  1753 C--PQKAPLCQSEPCFNGGTCREGWGTYSCECP-EGYAGNSCQDNIPAPWRFSGDGSLSFNPLLR 1814

  Fly  1212 -VQYTFPENAQADTEEDNIALGFITTRPDAVLLRVESATTQDYMELEIVEGNIFMVYNIGSVDLP 1275
             :|..:           ..:....|.:.:|.||:::...... ..:.:.:|.::.::: |.   |
  Fly  1815 PIQLPW-----------TTSFSLRTRQKEAFLLQIQIGQNSS-AAVCLRQGVLYYIFD-GE---P 1863

  Fly  1276 LGEIGTKVNDNAYHVVRFQRKGGNATLQLDDYNVQALTPQSHHSTVFNTMSNVQVGGKFSRNGRN 1340
            :...|..::|..:|.|..:.:.|:               :.|.|..:.           .|:|  
  Fly  1864 MYLAGAFLSDGEWHRVEIRWQQGS---------------EIHFSVDYG-----------QRSG-- 1900

  Fly  1341 RIERPFAGVIAGLSVNKLRILDLAVERDPHITIRGDVQLVTGVLDRNDLQRMQQTLNSTRQTP-A 1404
              ..|.:..:.||.|.|                     :|.|..|           .|....| |
  Fly  1901 --SVPMSQKVQGLYVGK---------------------IVMGSPD-----------GSIGAVPEA 1931

  Fly  1405 SGYPGALDDLIFSGAGSG------CRGDDEDECTPPFESGSGDDLITPVYVPPTKQTTTSQQGNS 1463
            |.:.|.:.| :..|||..      .|.:.||.|    ||.:.    .|.:.|   ..::.|....
  Fly  1932 SPFEGCIQD-VRIGAGQSVLSRPTIRENVEDGC----ESRAQ----CPDHCP---NHSSCQSSWD 1984

  Fly  1464 LSTGGSSSGGVITNGTERA--CDDEDCVHG 1491
            |||....||.|   ||:.|  |....|..|
  Fly  1985 LSTCECDSGYV---GTDCAPICTVRPCASG 2011

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058 40/245 (16%)
EGF_CA 311..347 CDD:238011 10/36 (28%)
Laminin_G_2 386..517 CDD:280389 28/157 (18%)
LamG 555..716 CDD:238058 34/194 (18%)
EGF 746..777 CDD:278437 6/36 (17%)
Laminin_G_2 814..945 CDD:280389 28/157 (18%)
LamG 988..1136 CDD:238058 47/177 (27%)
EGF 1164..1195 CDD:278437 12/30 (40%)
Laminin_G_2 1233..1356 CDD:280389 19/122 (16%)
stanNP_001260871.1 Cadherin_repeat 364..460 CDD:206637 363/1785 (20%)
Cadherin_repeat 468..577 CDD:206637 26/117 (22%)
Cadherin_repeat 585..685 CDD:206637 12/99 (12%)
Cadherin_repeat 693..790 CDD:206637 23/110 (21%)
Cadherin_repeat 799..891 CDD:206637 20/97 (21%)
Cadherin_repeat 901..1003 CDD:206637 23/120 (19%)
Cadherin_repeat 1012..1108 CDD:206637 22/110 (20%)
Cadherin_repeat 1118..1216 CDD:206637 17/112 (15%)
Cadherin_repeat 1235..1313 CDD:206637 18/79 (23%)
EGF_CA 1483..1518 CDD:238011 5/34 (15%)
LamG 1558..1734 CDD:238058 48/182 (26%)
EGF 1760..1789 CDD:278437 11/29 (38%)
Laminin_G_2 1826..1944 CDD:280389 30/185 (16%)
TNFRSF <1963..2061 CDD:304602 18/63 (29%)
EGF_Lam 2095..2140 CDD:214543
HRM 2144..2200 CDD:280888
GAIN 2293..2458 CDD:293098
GPS 2743..2802 CDD:295363
7tm_4 2809..3028 CDD:304433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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