DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrx-1 and lama5

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:XP_009294934.1 Gene:lama5 / 321243 ZFINID:ZDB-GENE-030131-9823 Length:3665 Species:Danio rerio


Alignment Length:1160 Identity:248/1160 - (21%)
Similarity:402/1160 - (34%) Gaps:348/1160 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YQDNYADAAMTARTRPSMDMDQQRNRNQAELRLLPAQRTSTSAFES--PDLRFNKARRRRRSEQV 71
            :|..|.|:..|:.       |..:..|.|        .||.:|...  |.| ..|..|...:...
Zfish  2639 WQKQYGDSNATSE-------DINKALNDA--------NTSVAALSDTLPKL-IKKLDRLHNTTFQ 2687

  Fly    72 PPVVVEYRRSYRVLIVSALLVSLAASFVTLS------AGFQLDGSQN----SFYTFRKWYTGL-N 125
            |..:.:..:..|.||..|   ..||:.|::|      :|.|:....|    :.|:..:.|..| :
Zfish  2688 PSNISDSIQRIRQLIEQA---RNAANKVSVSMQFNGKSGVQVRTPSNVADLAAYSSLQMYIKLPS 2749

  Fly   126 GTLELEFKTEQPN-GLVLYTDD-GGTYDFFELKLVEGALRLRYNLGGGAQIITVGRELHDGHWHK 188
            .|::.:.:||..| ..|||..: ..:.::..:.|....||..:|:||.:..:.:..::.:..::|
Zfish  2750 PTIKKKRQTEATNPQFVLYLGNRDSSKEYMAVTLNGKKLRWHFNVGGSSVDVLMDEDVKNDFFNK 2814

  Fly   189 VQVLRNDE--QTSLIVDG-----VSQQRSTKGKEFQFGKFASNSDVYVGGMPNWYS--------- 237
            :.:.|..:  |.|:..|.     :.:....||::......|..:..||||.|:.:|         
Zfish  2815 LILERTLQYGQMSMTTDQDENNIIKRIMEAKGQKGLLNLPAEETVFYVGGFPSTFSPPGTLNLSS 2879

  Fly   238 ------SKLALLALPSVI-----FEPRF-------------RGA-----IRNLVYAD-------- 265
                  ..:.||::...:     ||..|             |.|     :.:.||.|        
Zfish  2880 PLDFFKGYVELLSINEELISLYNFEQTFDMNTTTDAPCSRKRPANTPEWVVDGVYFDGTGYVEVL 2944

  Fly   266 ---QPGGSTRRQEIKQ----------QRDIKCGDVPCDHGELPARERPLRGVRG------GNTT- 310
               |.|..|..|.|:.          ||:.|...:....|.|    |....|.|      ||.| 
Zfish  2945 FETQKGDRTFDQTIRLISQNGILLSFQREDKYVTIAVLDGFL----RVFYNVEGSLMPGPGNPTK 3005

  Fly   311 -------------------------------------------------DACERND----PCQHG 322
                                                             :|...||    ..:||
Zfish  3006 ISNADKKTLQVILQLNNMKMLVRLDRETLYTLYSEELNFTGRYFLGGVPEAEMPNDLKSIYLKHG 3070

  Fly   323 GI--C--ISTDSGPICECRNLEYDGQY--CEKEKA-PSEATFRGTQFLSYDLGQTGAEPIVSAQD 380
            .|  |  |....|...:.:.::..|..  |..:.. ..||.|.|..:|...:.....        
Zfish  3071 SIRGCFRIIKSMGSFVQIKTMKSSGISFGCPDDLLFTREAHFTGEGYLGLKMDYVDL-------- 3127

  Fly   381 AISFY----FRTRQPNGLLFYTGHGTDYLNLALRDGGVSLTMGLANGKQEMHIKPSKVRFDDHQW 441
            |.|||    |||.|.|||:||..:..:...:.|.:|.|.::      .....:|..|...||:. 
Zfish  3128 ANSFYGGIGFRTDQQNGLMFYHQNKDNVCKVMLDNGHVLVS------TDRKEVKSQKTYNDDNN- 3185

  Fly   442 HKVTVHRRIQEISSITSFCRLVTVVDDVYT---DHSHIAGKFTMLSSSRVYVGGAVNPRALLGAR 503
            |.|.|:|. |.:.||        .:|||..   :..::..:...|.....||||......     
Zfish  3186 HYVAVYRD-QNVLSI--------YIDDVLESSGETGNVTTRRNALQEGFTYVGGTPESNG----- 3236

  Fly   504 VHTNFVGCL-----------------------RKVEFSADTLNLNLIDLAKSGSKLIQVAGNLEY 545
             .||..||:                       ||..|:....:..|..|.....|.....||...
Zfish  3237 -PTNLTGCISNFFIKRANEPQIVEDLKTALEGRKYTFTCPDASAPLQMLNSPRPKKQNAPGNSRS 3300

  Fly   546 Q-----CPSGDPQ----DPVTFT-TRESHLVLP--PWETGKQSSISFKFRTKEPNGIIVLATGSK 598
            :     | .||..    |...|: :..||:...  |....|....|...|....:|:|....|.|
Zfish  3301 RMARDSC-QGDTSVQEVDAHHFSGSTHSHMRFDSLPQAFSKAPHFSISVRVNSSSGLIFHVAGGK 3364

  Fly   599 QPRAKNPVLIAIELLNGHIYIHLDLGSGASKVRASRRRVDDGDWHDLILRRNGRDAKVSVDGVWN 663
            ..|     ::|:.:.:||:.:.::.|...:.:| |::|..||.||.:.::..|....::|||:..
Zfish  3365 GQR-----MMALSVSDGHLTLLVNGGKRKTSIR-SKKRYSDGLWHTVFVKVEGDRGSLTVDGIDT 3423

  Fly   664 DFRTPGDGTILELDGHMYLGGVGPAYNSVSWPAAIWTATLRQGFVGCLRDLVLSGKAIDIAAFAR 728
            ..:....|........:|:||: |..:|.:          ..|||||:|||.|:..::.      
Zfish  3424 QNKRVSAGGKSMFAAPLYIGGL-PVDHSAA----------MAGFVGCVRDLKLNEVSLQ------ 3471

  Fly   729 VQDSASVKPSCHVQANVCNGNPCLNGGTCLEGWNRPICDCSATLYGGPTCGRELATLAFNGSQHM 793
                   .||..|....|...|...|                            |..:..|. .|
Zfish  3472 -------SPSVSVGVTPCYQQPLQPG----------------------------AHFSSRGG-FM 3500

  Fly   794 TI--WLGNGQGTKTQTEELVIRFKTSRPAGLLLLTSAESNSPDRLEIALVAGRVRA--------- 847
            ||  .|..||..:.|.|   :|..:.  :||||.|.|:..  .:|.:.|..|:|..         
Zfish  3501 TIDESLVLGQDLEIQLE---VRLDSG--SGLLLHTGAKKT--HQLSVYLEQGQVTVLMNSGSGEF 3558

  Fly   848 SVRLSDREKNLLAGQSVLNDNNWHTIRFSRRASNLRLQVD-----GAPPVRGMLSETILGRHSTM 907
            ||.|:.:|.        |.|..||||...::::.::|.||     |..|.:   |.:..|:    
Zfish  3559 SVSLTPKES--------LCDGGWHTIAIVKKSNVIQLHVDSFSEHGVAPKQ---SRSNGGK---- 3608

  Fly   908 EIRSVHLGGLFHAEEEIQMTSTMPNFVGQMQGLVFNGQ-----RYLDIVKSLGPE 957
              .:|:||||........::|::.:|.|.::..|.|.:     :.|.:..|:|.:
Zfish  3609 --EAVYLGGLPETITVPGLSSSVQSFQGCVRKAVLNHRPVMLSKPLSVSGSVGTQ 3661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058 38/204 (19%)
EGF_CA 311..347 CDD:238011 10/45 (22%)
Laminin_G_2 386..517 CDD:280389 37/156 (24%)
LamG 555..716 CDD:238058 41/163 (25%)
EGF 746..777 CDD:278437 3/30 (10%)
Laminin_G_2 814..945 CDD:280389 37/144 (26%)
LamG 988..1136 CDD:238058
EGF 1164..1195 CDD:278437
Laminin_G_2 1233..1356 CDD:280389
lama5XP_009294934.1 Laminin_N 51..290 CDD:278484
EGF_Lam 291..339 CDD:238012
EGF_Lam 350..413 CDD:238012
EGF_Lam 421..463 CDD:214543
EGF_Lam 482..529 CDD:214543
Laminin_EGF 529..577 CDD:278482
Laminin_EGF 575..622 CDD:278482
Laminin_EGF 620..667 CDD:278482
EGF_Lam 664..711 CDD:238012
Laminin_EGF 713..759 CDD:278482
Laminin_EGF 762..812 CDD:278482
EGF_Lam 815..858 CDD:238012
Laminin_EGF 1421..1469 CDD:278482
Laminin_EGF 1511..1561 CDD:278482
Laminin_EGF 1559..1607 CDD:278482
Laminin_B 1672..1796 CDD:278481
EGF_Lam 1842..1881 CDD:238012
Laminin_EGF 1894..1947 CDD:278482
EGF_Lam 1949..2002 CDD:238012
Laminin_EGF 2004..2048 CDD:278482
Laminin_EGF 2051..2099 CDD:278482
Laminin_EGF 2099..>2128 CDD:278482
mycoplas_twoTM 2158..>2351 CDD:275320
Laminin_I 2171..2429 CDD:283627
COG1340 2319..2558 CDD:224259
BAR 2383..2637 CDD:299863
Laminin_II 2611..2741 CDD:283628 27/120 (23%)
LamG 2757..2896 CDD:214598 28/138 (20%)
LamG 2932..3075 CDD:238058 25/146 (17%)
LamG 3110..3249 CDD:238058 43/168 (26%)
LamG 3320..3466 CDD:238058 41/162 (25%)
LamG 3490..3642 CDD:238058 48/204 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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