DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrx-1 and Cntnap5c

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:XP_017454265.2 Gene:Cntnap5c / 297846 RGDID:1566343 Length:1306 Species:Rattus norvegicus


Alignment Length:1186 Identity:270/1186 - (22%)
Similarity:472/1186 - (39%) Gaps:277/1186 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   357 FRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFY-TGHGTDYLNLALRDGGVSLTMGL 420
            |.|...|.|...|   :.:.:.:|.||..|::.|.:|:||: .|...|::.|.|:.|.::|.:.:
  Rat   183 FDGQSTLLYRFNQ---KTMSTLKDVISLKFKSMQGDGVLFHGEGQRGDHITLELQKGRLALYLNI 244

  Fly   421 ANGKQEMH-IKPSKV---RFDDHQWHKVTVHRRIQEISSITSFCRLVTVVDDVYTDHSHIAGKFT 481
            ...|..:. |.|..:   ..||..||.|.:.|    :....:|    ||  |..|.|..|.|:..
  Rat   245 DGSKARLSIIAPLAILGSLLDDQHWHSVLLER----VGKQANF----TV--DRNTQHFQIKGETD 299

  Fly   482 MLSSSRVYVGGAVNPRALLGARVHTNFVGCLRKVEFSADTLNLNLIDLAKSGSKLIQVAGNLEYQ 546
            .|........|.:...:..|..:..||.||:..|.::    .:|:|||||.....|...||:.:.
  Rat   300 ALDIDYELSFGGIPVPSKPGTFLKKNFHGCIENVYYN----GVNIIDLAKRRKHQIYSVGNVTFS 360

  Fly   547 CPSGDPQ-DPVTF-TTRESHLVLPPWETGKQSSISFKFRTKEPNGIIV---LATGSKQPRAKNPV 606
            |  .:|: .|:|| .:|.|:|:||........|:||.|||...:|:::   |:.||         
  Rat   361 C--SEPEIVPITFVNSRSSYLLLPGIPQIHGLSVSFHFRTWNEDGLLLSTELSEGS--------- 414

  Fly   607 LIAIELLNGHIYIHLDLGSGASKVRASRRR---------VDDGDWHDLILRRNGRDAKVSVDGVW 662
                    |.:.:.||.||....::...|.         ::||.||.:.:........:::|   
  Rat   415 --------GTLLLILDGGSLRLLIKKVARHGTEIITGSSLNDGLWHSVSINARRNRVTLTLD--- 468

  Fly   663 NDFRTPG-DGTILEL-DGHMYLGGVGP-------AYNSVSWPAAIWTATLRQGFVGCLRDLVLSG 718
            ||..:|. |.:.|:: .|:.|..|..|       ..|.:            :.|.||:|.:.:..
  Rat   469 NDAASPALDTSQLQIYSGNSYYFGGCPDNLTDSQCLNPI------------KAFQGCMRLIFIDN 521

  Fly   719 KAIDIAA--------FARVQ-DSASVKPSCHVQANVCNGNPCLNGGTCLEGWNRPICDCSATLYG 774
            :..|:.:        |:.:. |..|:|       :.|..|.|.:||.|.:.|....|:||.|.|.
  Rat   522 QPKDLISVQQGSMGNFSDLHIDLCSIK-------DRCLPNYCEHGGHCAQNWTTFYCNCSDTGYT 579

  Fly   775 GPTCGRELATLAFNGSQHMTIWLGNGQGTKTQTEELVIRFKTSRPAGLLLLTSAESN-------- 831
            |.||             |.:::        .|:.| |.|.| ...||...:.|..|.        
  Rat   580 GATC-------------HDSVY--------EQSCE-VYRHK-GHTAGFFYVDSDGSGPLGPLQVY 621

  Fly   832 ---SPDRLEIALVAGRVRAS-VRLSDREK---------NLLAGQSVLNDNNWH---TIRFSRRAS 880
               :.|::.:.:.......: |::|:.||         ..:.....|.|.:.|   .:.:..|.|
  Rat   622 CNITEDKIWMTVQHNNTELTWVQISNAEKAYAMTFNYGGSMEQLEALIDGSEHCEQEVTYYCRRS 686

  Fly   881 NLRLQVDGAP-----------------PVRGMLSETILGRHSTMEIRS-----VHLG------GL 917
            :|....||||                 .|..:.....:.:.:.::|||     ..:|      |.
  Rat   687 HLLKTPDGAPFTWWIGRSNKRHNYWEGSVPRVQQCRCVHKENCLDIRSFCNCDADIGEWAKETGF 751

  Fly   918 FHAEEEIQMTSTMPNFVGQMQGLVFNGQRYLDIVKSLGPELSALPSATFKLTARFVNSPAGQPYH 982
            ...::.:.:|..:.....:.:.         :....:|| |.......|              ::
  Rat   752 LSFKDHLPVTQIITTDTNRSKS---------EAAWKIGP-LRCYGDRHF--------------WN 792

  Fly   983 AATFRSKHSYVGLAMLKAYNSISIDFRFKTVEPNGLLVFNGGRRNDFVAVELVN-GHIHYTFDLG 1046
            |.:|.::.||:......|..|..|.|.|||...:|:.:.|.|.: ||:.:|:.: ..|.:|.|:|
  Rat   793 AVSFTTEASYLYFPTFHAEFSADISFFFKTTALSGVFLENLGIK-DFLRLEMSSPSEITFTIDVG 856

  Fly  1047 DGPVTMRDKSRIHMNDNRWHQVSIRRPGPKTHTLTVDDSFEIISLTGNNMH--LELAGILYIGGV 1109
            :|||.:..:|...:|||:||.:...| ..|..:|.||:..:.:.......:  |.|...|::|| 
  Rat   857 NGPVELLIQSPYPLNDNQWHYIRAER-NLKETSLQVDNLPQSMREASEEAYFRLHLTSQLFVGG- 919

  Fly  1110 FKDMYSKLPASISSRSGFEGCLASLDLGDASPSLTSDAVVPSSLVVSGCEGPTKCSQNACANRGN 1174
                      :.|.:.||.||:.||.|...:..|...|.:.|. |..||.|......:.|.|.|.
  Rat   920 ----------TSSRQKGFLGCMRSLHLNGQNTDLIERAKLMSG-VTPGCLGHCSSYGSNCLNGGK 973

  Fly  1175 CVQQWNAYACECDMTSYTGPTCYDE-SIAYEFGNNKGMVQYTFPE------NAQ-------ADT- 1224
            ||::.:.|:|:|..:...||.|..| |..:..|.:   |.|.|.|      |..       ||| 
  Rat   974 CVEKQSGYSCDCTNSPNEGPFCQKEISALFNSGTS---VTYLFQEPYLVIKNTSLLSSPIYADTA 1035

  Fly  1225 -EEDNIALGFITTRPDAVLLRVESATTQDYMELEIV-EGNIFMVYNIGSVDLPLGEIGTK-VNDN 1286
             .::.|.|.|:||:...:||.: :.::|:::.:.:. .|::.:.:.:..::..:..:.|: :.:.
  Rat  1036 PSKETIMLNFLTTQAPTILLYL-NFSSQNFLAILLSRNGSLQICFRLSKIESHVYTMNTENLANG 1099

  Fly  1287 AYHVVRFQRKGGNATLQLDDYNVQALTPQSHHSTVFNTMSNVQVG------------GKFSRNGR 1339
            ..|.|:..:.|...::|:|.   |..|........|.|:.::.:|            .|.:..| 
  Rat  1100 RVHQVKINKDGPELSIQMDQ---QLFTYNFSPKVEFWTLKSLVLGKVTETLGLDPEVAKVNILG- 1160

  Fly  1340 NRIERPFAGVIAGLSVNKLRILDLAVERD--PHITIRG-------------DVQLVTGV---LD- 1385
                  |.|.::.:..|.:..|..|:...  ..:|::|             ||..||.|   || 
  Rat  1161 ------FVGCLSSVQYNHIAPLKAALRHSGIAPVTVQGTLTESGCDSTLDSDVNAVTTVHSSLDP 1219

  Fly  1386 ---RNDLQRMQQTLNS 1398
               |::.:.:..|:.|
  Rat  1220 IGKRDEREPLTDTVQS 1235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058
EGF_CA 311..347 CDD:238011
Laminin_G_2 386..517 CDD:280389 36/135 (27%)
LamG 555..716 CDD:238058 43/182 (24%)
EGF 746..777 CDD:278437 13/30 (43%)
Laminin_G_2 814..945 CDD:280389 27/182 (15%)
LamG 988..1136 CDD:238058 45/150 (30%)
EGF 1164..1195 CDD:278437 9/30 (30%)
Laminin_G_2 1233..1356 CDD:280389 22/136 (16%)
Cntnap5cXP_017454265.2 FA58C <63..173 CDD:238014
Laminin_G_2 209..338 CDD:396680 36/142 (25%)
Laminin_G_2 396..522 CDD:396680 32/157 (20%)
EGF 551..582 CDD:394967 13/30 (43%)
LamG 793..937 CDD:238058 47/156 (30%)
EGF 961..>985 CDD:394967 7/23 (30%)
Laminin_G_2 1045..1173 CDD:396680 23/138 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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