DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nrx-1 and Lama3

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:XP_006525748.1 Gene:Lama3 / 16774 MGIID:99909 Length:3331 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058
EGF_CA 311..347 CDD:238011
Laminin_G_2 386..517 CDD:280389
LamG 555..716 CDD:238058
EGF 746..777 CDD:278437
Laminin_G_2 814..945 CDD:280389
LamG 988..1136 CDD:238058
EGF 1164..1195 CDD:278437
Laminin_G_2 1233..1356 CDD:280389
Lama3XP_006525748.1 LamNT 40..294 CDD:214532
EGF_Lam 295..343 CDD:238012
EGF_Lam 352..420 CDD:238012
EGF_Lam 422..462 CDD:238012
Laminin_EGF 488..535 CDD:365839
EGF_Lam 532..574 CDD:238012
Laminin_EGF 628..678 CDD:365839
EGF_Lam 681..724 CDD:238012
Laminin_EGF 1263..1311 CDD:365839
EGF_Lam 1308..1349 CDD:238012
Laminin_EGF 1353..1404 CDD:365839
EGF_Lam 1401..1451 CDD:238012
LamB 1509..1638 CDD:214597
EGF_Lam 1683..1729 CDD:238012
EGF_Lam 1731..1782 CDD:238012
Laminin_I 1844..2101 CDD:310534
SMC_prok_B <2062..>2329 CDD:274008
Laminin_II 2285..2413 CDD:368703
LamG 2432..2567 CDD:214598
LamG 2599..2739 CDD:238058
LamG 2766..2898 CDD:238058
LamG 2990..3132 CDD:238058
LamG 3156..3307 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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