DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrx-1 and Hspg2

DIOPT Version :9

Sequence 1:NP_001262840.1 Gene:Nrx-1 / 42646 FlyBaseID:FBgn0038975 Length:1847 Species:Drosophila melanogaster
Sequence 2:XP_030109089.1 Gene:Hspg2 / 15530 MGIID:96257 Length:4398 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nrx-1NP_001262840.1 LamG 110..263 CDD:238058
EGF_CA 311..347 CDD:238011
Laminin_G_2 386..517 CDD:280389
LamG 555..716 CDD:238058
EGF 746..777 CDD:278437
Laminin_G_2 814..945 CDD:280389
LamG 988..1136 CDD:238058
EGF 1164..1195 CDD:278437
Laminin_G_2 1233..1356 CDD:280389
Hspg2XP_030109089.1 EGF_CA 4153..4184 CDD:238011
LamG 4211..4369 CDD:238058
SEA 80..194 CDD:382994
LDLa 216..251 CDD:238060
Ldl_recept_a 300..336 CDD:365841
LDLa 342..376 CDD:238060
LDLa 385..420 CDD:238060
Ig_Perlecan_like 438..515 CDD:143220
LamB 607..733 CDD:214597
EGF_Lam 781..823 CDD:238012
EGF_Lam 830..887 CDD:238012
Laminin_EGF 896..938 CDD:365839
Laminin_B 1007..1141 CDD:365838
EGF_Lam 1175..1224 CDD:238012
EGF_Lam 1225..1281 CDD:238012
Laminin_EGF 1292..1339 CDD:365839
Laminin_B 1413..1545 CDD:365838
EGF_Lam 1580..1628 CDD:238012
EGF_Lam 1629..1686 CDD:238012
IG_like 1699..1779 CDD:214653
Ig_Perlecan_like 1787..1872 CDD:143231
IG_like 1888..1966 CDD:214653
I-set 1972..2058 CDD:369462
IG_like 2073..2150 CDD:214653
IG 2174..2249 CDD:214652
IG 2269..2342 CDD:214652
IG 2364..2441 CDD:214652
Ig 2450..2535 CDD:386229
IG 2563..2632 CDD:214652
IGc2 2658..2717 CDD:197706
IG_like 2748..2825 CDD:214653
IG 2846..2922 CDD:214652
IG_like 2943..3021 CDD:214653
Ig 3034..3120 CDD:386229
IG_like 3132..3213 CDD:214653
IG 3230..3306 CDD:214652
Ig 3327..3390 CDD:319273
Ig 3428..3494 CDD:386229
Ig 3518..3583 CDD:386229
I-set 3587..3669 CDD:369462
LamG 3676..3833 CDD:238058
EGF_CA 3856..3889 CDD:238011
EGF_CA <3901..3930 CDD:238011
LamG 3942..4091 CDD:238058
EGF 4116..4146 CDD:333761
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.