DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AP-2mu and ap2m1

DIOPT Version :9

Sequence 1:NP_001163686.1 Gene:AP-2mu / 42642 FlyBaseID:FBgn0263351 Length:437 Species:Drosophila melanogaster
Sequence 2:NP_988975.1 Gene:ap2m1 / 394572 XenbaseID:XB-GENE-6258427 Length:435 Species:Xenopus tropicalis


Alignment Length:439 Identity:379/439 - (86%)
Similarity:411/439 - (93%) Gaps:6/439 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWL 65
            ||||||:||||||||||||||||||||||||||||||||||||||||||||||||||:||:||||
 Frog     1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWL 65

  Fly    66 AAVTKQNVNAAMVFEFLLKIIEVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNTDSGTLK 130
            |||||||||||||||||.|:.:||.:||||||||||||||||||||||||||||||||:::|.||
 Frog    66 AAVTKQNVNAAMVFEFLYKMCDVMTAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALK 130

  Fly   131 TFITQQGIKS--ATKEEQMQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAH 193
            ||||||||||  .|||||.||||||||||||||||||||||||||||||.|||||||||||||||
 Frog   131 TFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAH 195

  Fly   194 VAGKVVMKSYLSGMPECKFGINDKIVMESKGRGLSGNSEAETSRSGKPVVVIDDCQFHQCVKLSK 258
            |:|:||||||||||||||||:|||||:|.:|:|.:.    ||.::||..:.||||.|||||:|||
 Frog   196 VSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD----ETGKTGKQSIAIDDCTFHQCVRLSK 256

  Fly   259 FETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIE 323
            |::|.||||||||||||||||||||||.||||||||||||||||:|||||:|||||||||.||||
 Frog   257 FDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIE 321

  Fly   324 VKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPI 388
            |:|||||||||||:||:|||||||||||||||||||||||||:|:|||||||.|:.||||.||||
 Frog   322 VRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPI 386

  Fly   389 SMNFEVPFAPSGFKVRYLKVFEPKLNYSDHDVVKWVRYIGRSGLYETRC 437
            ||||||||||||.|||||||||||||||||||:||||||||||:|||||
 Frog   387 SMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AP-2muNP_001163686.1 AP2_Mu_N 1..140 CDD:341440 125/138 (91%)
AP-2_Mu2_Cterm 166..436 CDD:271159 226/269 (84%)
ap2m1NP_988975.1 AP2_Mu_N 1..140 CDD:341440 125/138 (91%)
AP-2_Mu2_Cterm 168..434 CDD:271159 226/269 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 489 1.000 Domainoid score I380
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3000
Inparanoid 1 1.050 766 1.000 Inparanoid score I540
OMA 1 1.010 - - QHG53686
OrthoDB 1 1.010 - - D274992at33208
OrthoFinder 1 1.000 - - FOG0003937
OrthoInspector 1 1.000 - - oto105518
Panther 1 1.100 - - LDO PTHR10529
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R62
SonicParanoid 1 1.000 - - X2710
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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