DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12499 and urb-1

DIOPT Version :10

Sequence 1:NP_651044.1 Gene:CG12499 / 42637 FlyBaseID:FBgn0038968 Length:2059 Species:Drosophila melanogaster
Sequence 2:NP_504629.1 Gene:urb-1 / 179023 WormBaseID:WBGene00020273 Length:476 Species:Caenorhabditis elegans


Alignment Length:418 Identity:92/418 - (22%)
Similarity:161/418 - (38%) Gaps:86/418 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1506 ILGSYHAKLSPADRYGLALLEHYERFDVGLDKFRPFIWGESAVAHYALRAADEDVRTRLQQQETN 1570
            :|..|.|.....|....|:|:..|::.......:|.::||.|..:|      |::|         
 Worm    57 LLTVYRATCCELDMSIFAILQSLEKYGTDFSDLQPLVFGEEARKNY------ENLR--------- 106

  Fly  1571 VAQVLALIVRETSEYTIENF----PIWRSLHASQQLPSTEFQNPAKKSMSFGDNQLEQMVEQGQL 1631
             ...|.|.||.|.:..|:.|    .:|.         :|::                        
 Worm   107 -KMGLDLHVRITPDDAIKTFFDAATLWN---------TTKY------------------------ 137

  Fly  1632 DFPQDLRRICPKRETIYETCYDPAFLLPLMMHCFAPESVVWARWPVQNGLLAITFCGLSSLDKDM 1696
                   .:.|..|...|..||..|:|........|.|.:.::..|::..||:.|...||.|..:
 Worm   138 -------HVRPLTEENSEKIYDVRFVLRFFNSILHPASSLTSKLFVEHNCLALLFSCTSSSDSSV 195

  Fly  1697 RLAAASCQQRYRAHFELSN---FYERPLWTQAYENIQAGLADLRNSWLAQRRTHG---GTPRVPL 1755
            |..|.:|.|::..|.:..|   |.|:.|..                :|.:...||   ..|||..
 Worm   196 RTLAFACLQKFVNHLQELNTEIFAEKALIL----------------YLIRIFKHGFDSSVPRVSS 244

  Fly  1756 IPGLFIAHSFNLSTEPTHLLYKRLMMYLRLKQSFNFQTIPDFNVFFYSQEPE-HQQYREFIVELL 1819
            |...|.|....|...|:..:|.::|.:|.:|..|:.|.:|:|....:|..|| |.:.||:::.|:
 Worm   245 IITHFFARVSKLMLNPSSDVYPQIMAFLCMKPIFDIQNVPEFYKLLFSSSPEHHNEEREWVLTLI 309

  Fly  1820 RCGIKCSADLFLLVSTNTFKVLLGFYGSSLASLETNLLLLSVLSTCVKIPGAVKIMLEHVGILSW 1884
            ...:....|..:|.:....|:||..:.|.....::..|:|..|...|::|.....:....|:..|
 Worm   310 SEAMLEPIDYQVLQNRAGIKLLLSSFSSVWLERKSRSLILRTLQNAVQMPSVAHDLFTREGLHMW 374

  Fly  1885 LVGVIRDTEFHQFD---IIEGVISILNN 1909
            :..:|....|::::   :.:...|:|.|
 Worm   375 IASIIHSGRFNRWEKNYLAQVFCSLLEN 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12499NP_651044.1 Npa1 160..472 CDD:463325
NopRA1 1682..1884 CDD:465063 53/208 (25%)
urb-1NP_504629.1 NopRA1 195..374 CDD:465063 47/194 (24%)
Blue background indicates that the domain is not in the aligned region.

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