DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment pinta and ctg-2

DIOPT Version :9

Sequence 1:	NP_001287466.1	Gene:	pinta / 42635	FlyBaseID:	FBgn0038966	Length:	273	Species:	Drosophila melanogaster
Sequence 2:	NP_001254156.1	Gene:	ctg-2 / 174360	WormBaseID:	WBGene00011756	Length:	408	Species:	Caenorhabditis elegans

Alignment Length:	231	Identity:	44/231 - (19%)
Similarity:	79/231 - (34%)	Gaps:	67/231 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly    56 KFDVERAKKKLKTFYQMRAERTEWFDNRDPQLPEIQDLLKLGV----------FLP---IGPDAE 107
            |.||...|.|    :.:||......|..|     :..|.|:..          :||   ||.|.|
Worm    61 KIDVVVPKIK----FSLRAIHALGLDQED-----LSTLEKVAQKCDDCSVPLRYLPGSLIGLDHE 116

  Fly   108 QRMVVV----------IRTAAHDPKLHSQNNVFKTSKMILDLLLKLDPET-CARGMVAILDMQGV 161
            ..:|.:          :..|..:..|:...  ...|:.::.::.|::.|. ...|...|.|:.|:
Worm   117 NNVVSLQMIGHLDAAGLMPATRNSDLYRMR--IAESEGVMQIIRKMEKEQGKPLGTSVIFDLDGL 179

  Fly   162 QLGH----ALQMNPKLIKRSVESWTAYPCQPKLLEFTNAPRHVNFFLNTFRIFMTPKIRSRLFVR 222
            .:..    ||::...::.:..|   .:|...:.:...|.|.    |:......::|.:..:
Worm   180 SMVQIDLAALKVVTTMLSQLQE---MFPDVIRKIFIVNTPT----FIQVLWSMISPCLAKQ---- 233

  Fly   223 REGTSVSCDQLPKELGGQGLSYMELSVKWKQLVEEN 258
                   ..|..|.||..          |||.::||
Worm   234 -------TQQKVKILGND----------WKQHLKEN 252

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
pinta	NP_001287466.1	SEC14	87..240	CDD:238099	30/180 (17%)
ctg-2	NP_001254156.1	SEC14	98..267	CDD:214706	33/185 (18%)
ctg-2	NP_001254156.1	EMP24_GP25L	331..>405	CDD:279450
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910