DRSC/TRiP Functional Genomics Resources

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Protein Alignment lqfR and lqf

DIOPT Version :10

Sequence 1:NP_732736.2 Gene:lqfR / 42632 FlyBaseID:FBgn0261279 Length:1415 Species:Drosophila melanogaster
Sequence 2:NP_729266.2 Gene:lqf / 38846 FlyBaseID:FBgn0028582 Length:831 Species:Drosophila melanogaster


Alignment Length:774 Identity:189/774 - (24%)
Similarity:293/774 - (37%) Gaps:229/774 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQELAYSTFSYETFPEVMSMLWKRMLQD 75
            |..|...:.|:..||::.:.||||||::|||||:..:|.|:|..|::...|.|:|.|:||| |.|
  Fly    12 VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSAAIMSEIAELTYNVVAFSEIMQMIWKR-LND 75

  Fly    76 NKTNWRRTYKSLLLLNYLVRNGSERVVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHKVRELI 140
            :..|||..||:|:||.||::.|||:|....:|:|:.:::|..:.:.:| |||||.:||.|.::|:
  Fly    76 HGKNWRHVYKALILLEYLIKTGSEKVAQQCKENIFAIQTLREFVYFEE-GKDQGTHVREKAKQLV 139

  Fly   141 DFIQDDDRLREERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDYRSSRG 205
            ..::||:||:.||.||:|.|:::                    .....|.||.||.||..:....
  Fly   140 TLLKDDERLKNERVKAQKAKERF--------------------AQNPSGFGSDGYIDGPSQRDLP 184

  Fly   206 DNWYSD--KSA-------------------------------DKDRYEDDDTHYDGEREGSDSDS 237
            ..|..:  ||.                               ::.:...||.........|:.|.
  Fly   185 PGWQEEPPKSVSELEMVRPQTAGEEELQLQLAMAMSREEAEQEEAKRRSDDVRLQLALSQSEQDF 249

  Fly   238 PSPRRNYRYNDRASPAEVASEAKP---SSLNMNIRSKTVSSPVSKQPTSTASAKP---------- 289
            ..|      |.|..||....|.:.   ..|::::.:.::|||    |...|...|          
  Fly   250 KDP------NGRPIPAPKKEEQQSHLLDLLDISLGATSISSP----PLGAAGGAPTAVVDPWAMP 304

  Fly   290 -------------ALSQKKID-----------LGAAANFGKP---APGGAAGIHSPTHRDTPTSV 327
                         ..|..::|           |||    |.|   ||.||..             
  Fly   305 GPRAPSQLSDPWSGTSSPQVDPWNPSAAPRTILGA----GVPMTSAPLGAGN------------- 352

  Fly   328 DLMGGASPSPSTSKANNN---TQSNNNDLLDDLFKTCSPPPGQEKTLNSAAVIVDDDDDFNPRAS 389
            |..|..:.|||.:..::|   .|||.|...:....|.:.||.:...:.|.||........|..|:
  Fly   353 DAWGARTQSPSVASGSSNEGWLQSNGNANQNGRGATPAGPPAEGWLIKSTAVGALGAAPINHAAN 417

  Fly   390 DASQQEFGDFASAFGQPSAGSTISEPPSTGLVPAANDEFAD-FAAFQGSTTSTSALDG------- 446
            :             |..|:...::||.::....||....|| :|....|.|...|||.       
  Fly   418 N-------------GSSSSDPWLAEPAASAAGGAAAVGLADPWAPGAASQTGAGALDDPWKALGT 469

  Fly   447 NLLKTATPANDSFDLFNSAPTSTAAATTATDLLAGLGDLSIHQSM-PMAVEEQLASSNDSMSSAS 510
            ..:|..:|..|.|||..:...|..:.:.|::    ..:.|:...| |::........|.||.   
  Fly   470 GAIKKQSPEFDEFDLITNRNKSEHSNSNASN----NNNASLLDDMDPLSANYGNGGINSSMH--- 527

  Fly   511 PQPPSEAMRLAFSKAQKQLRDLMQVQSASAVAQVAAILGELHNSNALPGFTTPEQLVGLDR---- 571
               ||..     :.|:|.::|            ..:.|||  ||          .||.||.    
  Fly   528 ---PSTG-----ATAKKSIKD------------AHSFLGE--NS----------ALVNLDNLIKP 560

  Fly   572 ---QTCDWTCLAHGEYA-ALLNQLTELFSQDWPEPSQDVEVVNIFKLDHSFDY------------ 620
               ||......|:..:: .::...|.||.|..|.    |..:|..|....|..            
  Fly   561 IAPQTQTGNQPAYNPFSDNVVPPKTNLFQQQQPA----VPSINQLKQQAPFSVSMNQDPWAPVMG 621

  Fly   621 -VSVAFES------LQTRLDKFPSTIS-----SLLENMVKDESLISIALLHISRQRASL 667
             ||...:.      ..|.|:..||::.     |.|.|.:       |.:.||.:.:.:|
  Fly   622 GVSTTSQPKLPPPVRPTSLNLGPSSVGEFQLLSALSNPI-------IPIAHIPQPQPNL 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lqfRNP_732736.2 ENTH_EpsinR 28..153 CDD:340786 55/124 (44%)
Telomere_reg-2 1072..1184 CDD:462990
lqfNP_729266.2 ENTH_Epsin 28..150 CDD:340787 55/123 (45%)
UIM 208..227 CDD:197845 0/18 (0%)
PHA03247 <278..394 CDD:223021 29/136 (21%)
Blue background indicates that the domain is not in the aligned region.

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