DRSC/TRiP Functional Genomics Resources

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Protein Alignment lqfR and Clint1

DIOPT Version :9

Sequence 1:NP_732736.2 Gene:lqfR / 42632 FlyBaseID:FBgn0261279 Length:1415 Species:Drosophila melanogaster
Sequence 2:NP_001333689.1 Gene:Clint1 / 216705 MGIID:2144243 Length:641 Species:Mus musculus


Alignment Length:650 Identity:229/650 - (35%)
Similarity:306/650 - (47%) Gaps:165/650 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ISMWKVRELADKVTNVVMNYTETEGKVREATNDDPWGPTGPLMQELAYSTFSYETFPEVMSMLWK 70
            ::|||||||.||.|||||||:|.|.|||||||||||||:|.||.|:|.:||.||.|||:|:|||.
Mouse     2 LNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWS 66

  Fly    71 RMLQDNKTNWRRTYKSLLLLNYLVRNGSERVVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHK 135
            |||:|||.||||.|||||||.||:||||||||||:|||||||||||||.|.||.|||||||:|.|
Mouse    67 RMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQK 131

  Fly   136 VRELIDFIQDDDRLREERKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYN---D 197
            |:||::|.||||||||||||||||||||:|:|||::|       |:.            ||   |
Mouse   132 VKELVEFAQDDDRLREERKKAKKNKDKYVGVSSDSVG-------GFR------------YNERYD 177

  Fly   198 GDYRSSRGDNWYSDKSA-----------DKDRYEDDDT--------HYDGEREGSDSDSPSPRRN 243
            .:.:|...:.|..:|||           ||.....|||        ..|.....||||.....| 
Mouse   178 PEPKSKWDEEWDKNKSAFPFSDKLGELSDKIGSTIDDTISKFRRKDREDSPERCSDSDEEKKAR- 241

  Fly   244 YRYNDRASPAEVASEAKPSSLNMNIRSKTVSSPVSKQPTSTASAKPALSQKKIDLGAAANF--GK 306
               ..|:...|...|.:      .:.:|.:....:.:.|:|...:.|...|.|||||||::  .|
Mouse   242 ---RGRSPKGEFKDEEE------TVTTKHIHITQATETTTTRHKRTANPSKTIDLGAAAHYTGDK 297

  Fly   307 PAPGGAAGIHSPTHRDTPTSVDLMGGASPSPSTSKANNNTQSNNNDLLDDLFKTCSPPPGQEKTL 371
            .:|...|..|:|           ...|.||..:||::.:        |.|||             
Mouse   298 ASPDQNASTHTP-----------QSSAKPSVPSSKSSGD--------LVDLF------------- 330

  Fly   372 NSAAVIVDDDDDFNPRASDASQQEFGDFASAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQG 436
                       |.:.:::..|...||.||. ||..:|........::|     |.:|.|::||..
Mouse   331 -----------DGSSQSAGGSADLFGGFAD-FGSAAASGNFPSQATSG-----NGDFGDWSAFNQ 378

  Fly   437 STTSTSALDGNLLKTA------------------TPANDSFDLFNSAPTSTAAATTATDL----- 478
            :.:...|..|.|..:|                  ..|::|.|||:...:|.|..|::..:     
Mouse   379 APSGPVASGGELFGSAPQSAVELISASQPALGPPPAASNSADLFDLMGSSQATMTSSQSMNFSLM 443

  Fly   479 ---LAGLGDLSIHQSMPM------------------------------------AVEEQLASSND 504
               ..||| |.:.:|.|:                                    :|...|.:...
Mouse   444 STNTVGLG-LPMSRSQPLQNVSAVLQKPNPLYHQNTDMVQKSASKTLPSTWSDPSVNISLDNLLP 507

  Fly   505 SMSSASPQPPSEAMRLAFSKAQKQLRDLMQVQSASAVAQVAAILGELHNSNALPGFTTPEQLVGL 569
            .|..:.||.||....:.....|:.|..:.|...|..::..:.:|.....:|.|.|...|..:.|:
Mouse   508 GMQPSKPQQPSLNTMIQQQNMQQPLNVMTQSFGAVNLSSPSNMLPVRPQTNPLLGGPMPMNMPGV 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lqfRNP_732736.2 ENTH_epsin 27..150 CDD:239627 94/122 (77%)
DUF4045 <226..459 CDD:289995 55/252 (22%)
Telomere_reg-2 1072..1184 CDD:287202
Clint1NP_001333689.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831902
Domainoid 1 1.000 207 1.000 Domainoid score I2884
eggNOG 1 0.900 - - E1_KOG2057
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H133740
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005493
OrthoInspector 1 1.000 - - oto94597
orthoMCL 1 0.900 - - OOG6_103183
Panther 1 1.100 - - LDO PTHR12276
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2102
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.770

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