DRSC/TRiP Functional Genomics Resources

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Protein Alignment lqfR and clint1b

DIOPT Version :9

Sequence 1:NP_732736.2 Gene:lqfR / 42632 FlyBaseID:FBgn0261279 Length:1415 Species:Drosophila melanogaster
Sequence 2:XP_009293876.1 Gene:clint1b / 100537648 ZFINID:ZDB-GENE-111011-3 Length:612 Species:Danio rerio


Alignment Length:655 Identity:233/655 - (35%)
Similarity:314/655 - (47%) Gaps:180/655 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 MNYTETEGKVREATNDDPWGPTGPLMQELAYSTFSYETFPEVMSMLWKRMLQDNKTNWRRTYKSL 87
            |||:|.|.|||||||||||||:|.||.|:|.|||.||.|||||:|||.|||:|||.||||.||:|
Zfish     1 MNYSEIESKVREATNDDPWGPSGQLMGEIAKSTFMYEQFPEVMNMLWTRMLKDNKKNWRRVYKAL 65

  Fly    88 LLLNYLVRNGSERVVTSSREHIYDLRSLENYTFTDEGGKDQGINVRHKVRELIDFIQDDDRLREE 152
            |||.||:||||||||||:|||||||||||||.|.||.|||||||||.||:|:::|:|||||||||
Zfish    66 LLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDENGKDQGINVRQKVKEMVEFVQDDDRLREE 130

  Fly   153 RKKAKKNKDKYIGMSSDAMGMRSGGYSGYSGGSGGGGGGSGGYNDGDYRSSRGDNWYSDKSA--- 214
            |||||||||||||:|||.||             ......||...|.:.:|...::|..:||:   
Zfish   131 RKKAKKNKDKYIGVSSDNMG-------------SSRQSNSGERFDAESKSKWDEDWDKNKSSFPF 182

  Fly   215 --------DKDRYEDDDTHYDGEREGSDSDSP---SPRRNYRYNDRASPAEVASEAKPSSLNMNI 268
                    ||.....|||.....::..| |||   |.....|.:....||::..:.....:..|.
Zfish   183 SEKLGEIGDKIGSTIDDTISKFRKKEKD-DSPDHISDNEEDRVSQNGRPAKLEFKDDEEIITTNS 246

  Fly   269 RSKTVSSP--VSKQPTSTASAK-PALSQKKIDLGAAANFGKPAPGGAAGIHSPTHRDTPTSVDLM 330
            ...|.|:.  .|...|:|.:.| ..:..|.:||||||::        .|.:|....|..||    
Zfish   247 IQITQSTDTITSNSTTTTLTRKRGGVPSKTVDLGAAAHY--------TGDNSSPEADNKTS---- 299

  Fly   331 GGASPSPSTSKANNNTQSNNNDLL------DDLFKTCSPPPGQEKTLNSAAVIVDDDDDFNPRAS 389
                       ||.::.....|||      ..|..:...|.|:...|.|                
Zfish   300 -----------ANQSSTPGLTDLLIVQSGSGHLLSSGKTPSGRNSNLIS---------------- 337

  Fly   390 DASQQEFGDFASAFGQPSAGSTISEPPSTGLVPAANDEFADFAAFQGSTTSTSALDGNLLKTATP 454
                 :|.||:|    |:|.:::  ||::.|:.|.|.||..:     :|.||:..|..   |.:|
Zfish   338 -----DFADFSS----PAASASL--PPASVLLSAGNGEFCGW-----NTVSTTPPDAT---TQSP 383

  Fly   455 ANDSF-DLFNSAPTSTAAATTATDLLAGLGDLSIHQSMPMAVEEQLASSNDSMSSASPQPPSEAM 518
            ..|.| |:  |.||    |:|.|..|....||.          :.:|.:|.|:|:      |::|
Zfish   384 IPDLFSDM--SVPT----ASTPTSALLSSADLF----------DLMAPNNSSIST------SQSM 426

  Fly   519 RLAFSKAQKQLRDLMQVQSASAVAQVAAILGELHNSNALPGFTTPEQLVGLDRQTCDWTCLAHGE 583
              .|:         |..|:|::....:..:|    |..||      |.:||  ||      :.|:
Zfish   427 --TFN---------MCPQNATSALSRSQTIG----SQLLP------QQMGL--QT------SEGK 462

  Fly   584 YAALLNQLTELFSQDWPEPSQDVEVVNIFKLDHSFDYVSVAFESLQTRLDKFPS-----TISSLL 643
            .:         ....|.:||     |||     |.|::|....         ||     |:::::
Zfish   463 LS---------MPSTWSDPS-----VNI-----SLDFLSAGLN---------PSKPTQPTLNTMM 499

  Fly   644 ENMVK 648
            :..|:
Zfish   500 QQGVQ 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lqfRNP_732736.2 ENTH_epsin 27..150 CDD:239627 95/122 (78%)
DUF4045 <226..459 CDD:289995 57/244 (23%)
Telomere_reg-2 1072..1184 CDD:287202
clint1bXP_009293876.1 ENTH_epsin 5..128 CDD:239627 95/122 (78%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574747
Domainoid 1 1.000 210 1.000 Domainoid score I2763
eggNOG 1 0.900 - - E1_KOG2057
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005493
OrthoInspector 1 1.000 - - otm25397
orthoMCL 1 0.900 - - OOG6_103183
Panther 1 1.100 - - O PTHR12276
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.830

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