DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13850 and Fastkd1

DIOPT Version :9

Sequence 1:NP_001262834.1 Gene:CG13850 / 42630 FlyBaseID:FBgn0038961 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001178667.1 Gene:Fastkd1 / 311112 RGDID:1563531 Length:832 Species:Rattus norvegicus


Alignment Length:561 Identity:109/561 - (19%)
Similarity:177/561 - (31%) Gaps:215/561 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 IASISLP-----QMVKVMSTLAQRKRRSTPLLR-SLAFNISSASESLDLKQAGDVLFAMSTLNFQ 255
            :|.:|||     ..|::.:.|....|   |.:| .|...|...||.|..:||..||.||..:..:
  Rat   279 LAELSLPSDHPESFVRLFAALGPVAR---PEIRKQLKSTILLLSEELSSQQALTVLGAMEDMESR 340

  Fly   256 DSVLGAKVCADVQSALPKNVE--KSAVVGSIITSLGILRYRDLDILESLTQWLLKNSEI-CRPQD 317
            ||.|..|:.    |.|.::::  ||..:..||.:|..|.::..::...|.:.||...|. ..|.:
  Rat   341 DSHLIKKIV----SVLYRHLDNCKSVELLKIIQALTFLHFQSKELFMKLREVLLSRLEASVTPSE 401

  Fly   318 LSAYFLTSALLNFKSAQLEEVSKKLVKSIVRE-DFTKQSE------------------------- 356
            :|.  |.|||.......|.|.:....::::.: ||.:.|:                         
  Rat   402 VSV--LVSALSMLPYPHLNETALSRTETVLPQCDFRELSDLVVCLMRWIQNDHLCSASTAGKQLD 464

  Fly   357 -------W----------LSFVW------------------SLTML----GLVEHGHLASVLS-- 380
                   |          |..:|                  |:|.|    ..::|.::|.:.|  
  Rat   465 LLQKLDHWGHRRLQQSTSLDLLWEELKSVKGEWLHESLVEESITALQRFMDEIDHSNVAKIASFL 529

  Fly   381 --ADFLETLKKDKAGVTATSKMR---------------LLN----------------LNSYAQ-- 410
              .::|.|...|:.......:::               :||                .|||..  
  Rat   530 SKTNYLSTPLLDRIASVVVEQIKKIHPFSVLAIILPFSILNYDPPQKDEFFGACVQCCNSYLGTL 594

  Fly   411 -------------------------------LIATDYKGPLLPT-------------------DS 425
                                           |...|.:..:||:                   :.
  Rat   595 DPGTLVFLGFSMATLEYFPEDLLKKMFNIEFLARLDSQLEILPSSLSARIQFRLMELNRAVCLEC 659

  Fly   426 PVYQVPMAHPKAKQVLVN---GMLDA--------LKSLLPASNHLQTAVDTKMGFLIDALCHFDA 479
            |..|||..|.:..|...|   |:::.        |..:|....:::.:..:.....:|..|..|.
  Rat   660 PELQVPWFHDRFCQRQFNKDTGVMNGAQQQIYKMLAEVLGGHRYVKPSTLSPYYHTVDFECILDK 724

  Fly   480 NKNPLPLDKEN-----------------------PNAIRVALMVIDFHDICHG-THRSGSGVTNL 520
            .|.|||.:..:                       |.|.|:|:..:|....|.. .|..|......
  Rat   725 RKKPLPYESHSVTPGKSPGVHGDSNTSRAEPRLPPEAERIAIEFLDVRAFCSNILHLKGKSAMKK 789

  Fly   521 TFDLLEKSGYHVIPVPYNEF-----STSDKLLKRVQYLESK 556
            ..  ||..||.||.|||.|:     ||.|   .|:.||..:
  Rat   790 RH--LEILGYRVIQVPYFEWNSMAMSTKD---TRMDYLREQ 825

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13850NP_001262834.1 FAST_1 319..385 CDD:284217 19/134 (14%)
FAST_2 402..484 CDD:285557 23/160 (14%)
RAP 498..556 CDD:214932 20/63 (32%)
Fastkd1NP_001178667.1 FAST_1 560..628 CDD:284217 6/67 (9%)
FAST_2 648..729 CDD:285557 14/80 (18%)
RAP 766..824 CDD:214932 20/62 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21228
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.