DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpdh3 and Gpd1

DIOPT Version :10

Sequence 1:NP_732726.2 Gene:Gpdh3 / 42624 FlyBaseID:FBgn0263048 Length:1304 Species:Drosophila melanogaster
Sequence 2:NP_071551.2 Gene:Gpd1 / 60666 RGDID:621381 Length:349 Species:Rattus norvegicus


Alignment Length:349 Identity:155/349 - (44%)
Similarity:228/349 - (65%) Gaps:4/349 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAGKLKICIIGAEGWGSAIAAVVSNNVLE-GDFDSRVHLYVYDEMIRDTALSEIINTRHENVKYL 64
            |||| |:||:|:..||||||.:|.:|..: ..||.||.::|::|.|....|:|||||:|||||||
  Rat     1 MAGK-KVCIVGSGNWGSAIAKIVGSNASQLAHFDPRVTMWVFEEDIGGRKLTEIINTQHENVKYL 64

  Fly    65 PGIKLPNNLIAVNDLLEAAQNADILVFSTPLEFVQSYCNILSGNVKESAFAVSMTKGLLSENGEG 129
            ||.|||.|::||.|:::||..||||||..|.:|:...|:.|.|::|.:...:|:.|| :.|...|
  Rat    65 PGHKLPPNVVAVPDVVQAATGADILVFVVPHQFIGKICDQLKGHLKANTIGISLIKG-IDEGPNG 128

  Fly   130 IELVSHAISESLGIPCYSMMSAHSAMEMAQGKLCEVTIGCSDNSHSKLLISAMQTNNCRVISVND 194
            ::|:|..|.||||||...:|.|:.|.|:|:.|.||.||||.|.:..:||...|||.|.|:..|.:
  Rat   129 LKLISEVIGESLGIPMSVLMGANIASEVAEEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQE 193

  Fly   195 VDGVELCGTLTDVVALGAGFIDGLRLGENARLAAIHLGVKEIMRFIKTFFPSSKMS-TFYESCGV 258
            ||.||:||.|.::||:||||.|||..|:|.:.|.|.||:.|::.|.|.|...|..| ||.|||||
  Rat   194 VDTVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGSVSSATFLESCGV 258

  Fly   259 TNAVASSFVDKNVTFAKSLVTSGQTIEEIEANLHSGRKLLGPMVASNVNAFLENGLMQHEFPLFT 323
            .:.:.:.:..:|...|::...:|::||::|..:.:|:||.||..|..:::.|::..:..:|||||
  Rat   259 ADLITTCYGGRNRKVAEAFARTGKSIEQLEKEMLNGQKLQGPQTARELHSILQHKGLVDKFPLFT 323

  Fly   324 AIHLICQSEAPPELMIEALRNHPD 347
            |::.:|....|....|..|:|||:
  Rat   324 AVYKVCYEGQPVGEFICCLQNHPE 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpdh3NP_732726.2 glycerol3P_DH 6..342 CDD:274551 147/337 (44%)
COG5022 <463..952 CDD:227355
Mplasa_alph_rch <540..730 CDD:275316
PRK13729 914..>1153 CDD:184281
Gpd1NP_071551.2 glycerol3P_DH 5..342 CDD:274551 147/337 (44%)
Blue background indicates that the domain is not in the aligned region.

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