DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18596 and tarbp1

DIOPT Version :9

Sequence 1:NP_651031.1 Gene:CG18596 / 42622 FlyBaseID:FBgn0038953 Length:1136 Species:Drosophila melanogaster
Sequence 2:XP_012819168.2 Gene:tarbp1 / 100493389 XenbaseID:XB-GENE-987523 Length:1630 Species:Xenopus tropicalis


Alignment Length:1579 Identity:322/1579 - (20%)
Similarity:549/1579 - (34%) Gaps:556/1579 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SLPTTRATTATTTHAVVQAVETYIQNQNLLGEIAELDDMLYDLVSMHKDNELALKRVLQCIHNLL 66
            |||..:..|...:..|:.||...:|..::.|...|||.::...|       .|||          
 Frog   155 SLPRHKEMTVEESIEVLGAVVPILQKNSVSGCSNELDQIVNATV-------YALK---------- 202

  Fly    67 QTNSKYNVRFGPKVFHKLVSVVIADSREDSASRRQLVANLLVCVQLHIRKFPRIEA-KFVLQQLW 130
                                    :..:::|:        |:|.:|    .|.:.: :..|..||
 Frog   203 ------------------------EGTDETAN--------LICGRL----LPSLGSDRRSLNLLW 231

  Fly   131 SLSQSNERQPH-------AAQILV------HLFDDFVNN--LGTECAQELLVLTRNLLQS-DVRD 179
            .|...|..:..       :.::||      |||.....:  |.:.|......|.:..|.| |...
 Frog   232 DLLMVNNDKIKGDDGICLSRRLLVLSTLSDHLFVTEAKDRPLKSWCCSSFWTLVQGCLCSPDSLT 296

  Fly   180 DRRSAYFLMHKL---QEIDEVLA-ALQCSE------------------VQWSAYVGIMENLEEQQ 222
            .:|:.|.|...:   ||..|.:| ::.|..                  :.|..|:.|:|.||..|
 Frog   297 RKRAVYLLKRAIDWCQETGEEMACSIDCCRDGDPALFFWSTWKNEAIVLFWENYLLIVETLEGNQ 361

  Fly   223 SHLVLPTLSTLLPRMG-LMSNNLSEDWLDWL----RILCI--RLLGDNNILVLRWTLKYFLSHFS 280
            .|::.|    :||::. ::.:::||:...||    ..|||  |:....|..:.:..:.:||..::
 Frog   362 IHVIKP----VLPKLNMILESSVSENKDSWLFHPSWHLCIYKRMFESENKTLAKEGVLHFLDMYN 422

  Fly   281 LEQISRFNLLTQFLA-----ATNRTQLYNPE----VPDC---LTKQQITDFSAQFPAEI------ 327
            .:.:......::|:.     |.:.:.:|:..    :.||   .||.|  .|.|:|.:.:      
 Frog   423 SKSLPESPSCSEFIIGPLMDAMSESSMYSRSSDQLIGDCPILATKFQ--KFLAKFVSSLHQGNRG 485

  Fly   328 -----LLEALVCVPWHAVPLIHWLQA---------W---------ELKQLPVVSKELLFKLGARV 369
                 .::.:....|.|:|::...:|         |         |:.|..:.:.::|.:..|:.
 Frog   486 LFLLKFIKKMTSRHWCAIPILFMAKALADIPEKKIWGVDGLLLLREVLQCTMTTHQVLLRGAAQC 550

  Fly   370 RSLQNPVLRGEAINYVIFSLSATIDSL-------------------------------------- 396
            ..||..:...:|....:..:|:.:.||                                      
 Frog   551 FFLQAAIKLTDAEKVTLSDVSSFLISLRADESLDRGSKLWKEVCIWFKENDAIFKKDSVYEFTGS 615

  Fly   397 ----SLGDYLLFMESLYNTI-----------DRYQSHSQLAQKIRNCSNLE--------KHIASF 438
                ||..|..::...|.|:           |.|:|. .:|..:...::::        ...|..
 Frog   616 QQISSLSMYTKYLVEDYLTVPASKGEDELMPDWYESR-LVATMVLLAADVDSSKVDIALSETADL 679

  Fly   439 N------IRCCELVSQMDY----KHDVFVAFLEKLRTVPKSKHGW----------WRLLPI---- 479
            |      :.|...:|...|    |.|..:..|.||.....||...          |.::..    
 Frog   680 NFMLTPLLTCLSKLSTNAYMPILKTDKILQLLLKLLQTCSSKSAQTKTDGLLTVIWNVITTTATN 744

  Fly   480 ---FLHR----------ELDHPEQYL-------------------DFYRSVYDLDTSFLESGVSL 512
               |:.|          :||..:.||                   ..::.:|.|.|:..|:...|
 Frog   745 IFEFIVRRLSGELKTIADLDRCDLYLAVLSEFVNLSLKFGWKKSFSIWKFIYYLTTASAETLQQL 809

  Fly   513 --------EQMQQHL----------LNRLDCQTREE------------KSFVLEHSVD------- 540
                    ||:|:.:          :....||.:|:            .|..|..|:.       
 Frog   810 SKKDENFGEQIQKVVSMACLASVCGIASYSCQFQEDSYNYVSVLCRYLSSMQLNSSLSKPIACDG 874

  Fly   541 -LFVQINLPTWSKLEVLNLNP----LELLDRGTEETFAT--LSN--------------------- 577
             |..:.....|.|:....|..    |..:.|..|.:|:|  :.|                     
 Frog   875 RLLEETTSQGWGKIVARYLRDQWVCLHFVLRKHEYSFSTSDIKNSEFAPLIFSAPTSSLQSALDV 939

  Fly   578 -----------------------------------------ILSTHDEQLADQNVLPAFISRL-- 599
                                                     :||:.:.||.....|.||:..:  
 Frog   940 LTVVPSTEALPVFHCMKLLVPKVIHSSELLAVECINTAWKIVLSSCNTQLVFWPTLQAFVEFVFS 1004

  Fly   600 -----------GKLKVRETQAILKYAVQNLSSEEYEKC-VVDVLEKNTFLLGTMDCEEYIKAPT- 651
                       |:|..|     :|..:|..|.....|. |.:||..:.:...|    :|.|.|: 
 Frog  1005 NEVLSGAAYTKGQLYFR-----IKEIIQETSDMSISKTGVFNVLVSHCYQSWT----DYSKKPSI 1060

  Fly   652 ------------SFVIKRMLQGETTTGDARIERAFEQISDTGA-----------------MDR-- 685
                        ..:.:..:.|.....|.|:      |.||.|                 |:|  
 Frog  1061 KDDDLLHAKCYMEILTEACVFGTVFRRDQRL------IQDTHAFIESLGKDCAANIAVTSMNRDE 1119

  Fly   686 -------VQFIQYAKNSTGLDISFICDDLLRMNNE---LSRKKPRYFANCKEHRMKMRIGKALLD 740
                   ..|......|..|...|:.|.::.:.::   :|:.|.||:.|...||:|.|:.:.:|.
 Frog  1120 HQVRICATAFFSCLDESNPLHKEFLQDLVIHLLDKDILVSKTKTRYYGNSLHHRLKNRLWQTMLI 1184

  Fly   741 LSDRWKWS------DNLWEAVLCPSDQPNISFMYEYLVSKMLPSIDLLL---------------E 784
            |..:....      |.:::|.. .::|.::.::.|:.:..:|.:..:.|               |
 Frog  1185 LIPKLDQDFLSGIIDRIFQAGF-SNNQASVKYLIEWAIILILHTHPIFLSKFWDCFSSVRFYTEE 1248

  Fly   785 QLK-----LLATLKPSQQISLVSVVHIYCLTRWESIQHEQLVEVFAVLLPLTMGANFQTRLLAQL 844
            :||     .|:.| |...:.:.::..          :...|......:|......||..||.|.:
 Frog  1249 KLKTSICTFLSVL-PHFDVVIANIPD----------KGASLKRALVTVLQWCFNHNFSVRLYALI 1302

  Fly   845 VLHRICSECEDRSIQ-----------------------------------------MPIADALKK 868
            .|.::.:.|:.:.||                                         .|:.|...:
 Frog  1303 ALKKLWAMCKQQCIQEFDELALVIESSLDQVENIQGTGNARKNWLRIQNHFFFSTFHPLQDYSIE 1367

  Fly   869 SIKVTLSEKLTEFQCEARLLLPELGKQCPTSVSDCILMMTNAPFDENISFISCSYDFRMKLKRAL 933
            :|..|| ..|:|. .|...:.|.......:::....|.:.| |...|:..:|.  |:..|     
 Frog  1368 TIFYTL-PSLSEL-IEDEWISPHKFSSYTSNLWQSSLPLNN-PRPMNVDLLSS--DWLQK----- 1422

  Fly   934 ETFKRKQSVLIPELATSLAALNGN------VQRKMNPVGDIYPESD--FVVSNKA----RDDHEL 986
                          .|:.:.|..|      :|:|:.|..:..|:.|  ..|.|:|    :....|
 Frog  1423 --------------DTAGSDLGDNETEWTDIQKKIIPWKNSIPDIDLEMAVQNRAAKLGKSSGSL 1473

  Fly   987 IVVASLIDKLPNLGGLARTCEVLGVNTLILGLKSQAEKSDFTNLSMTAEKTLNILEVNPESLAGF 1051
            |||||||||..|||||.||||:.|.:.|::..........|..||::||:.|.::||.|..|..:
 Frog  1474 IVVASLIDKPTNLGGLCRTCEIFGASALVVDSLHHVNDKQFQYLSVSAEQWLPLIEVKPTQLLEY 1538

  Fly  1052 LLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGFLDYAVEIPQYGLVRS 1116
            |..|:.|||.|:|.||||.|.:..|:.||:||:||||:|:.|||||||..||..|||||.|::||
 Frog  1539 LQLKKNEGYTIIGVEQTAKSFDLTDYCFPEKSLLLLGNEREGIPANLIQHLDVCVEIPQQGIIRS 1603

  Fly  1117 LNVHVAGSLFIWEYCKQHL 1135
            |||||:|::.||||.:|.:
 Frog  1604 LNVHVSGAVLIWEYTRQQI 1622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18596NP_651031.1 SpoU_methylase 986..1128 CDD:278985 76/141 (54%)
tarbp1XP_012819168.2 SpoU-like_TRM3-like 1473..1617 CDD:349964 78/143 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 151 1.000 Domainoid score I4313
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 237 1.000 Inparanoid score I3297
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D171334at2759
OrthoFinder 1 1.000 - - FOG0002756
OrthoInspector 1 1.000 - - oto104698
Panther 1 1.100 - - LDO PTHR12029
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2317
SonicParanoid 1 1.000 - - X4127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

Return to query results.
Submit another query.