Protein Alignment Polr3F and polr3f

DIOPT Version :10

• Sequence 1: NP_651029.1
• Gene: Polr3F / 42619
• FlyBaseID: FBgn0038951
• Length: 293
• Species: Drosophila melanogaster
• Sequence 2: NP_957481.1
• Gene: polr3f / 394162
• ZFINID: ZDB-GENE-040426-972
• Length: 314
• Species: Danio rerio
• Alignment Length: 300
• Identity: 149/300 - (49%)
• Similarity: 201/300 - (67%)
• Gaps: 11/300 - (3%)

  Fly     4 EVSQLLLAVVQGIPAGATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPEK 68
            ::...:..:.|..|.|.|:..:...:|.|.|..|..|:|.||..|.:::|:....|:||.||.:.
Zfish    15 DIENRIKELCQQFPHGITDQVIQNDMPHVEAQQRATAINRLLSVGQLDLLRNSSGLLYRLKDTQS 79

  Fly    69 KSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNAS 133
            .|.: |.:||:||:||.|:|:.||||||.||||.||||.:.::||||||||:||||||||||.||
Zfish    80 ASKV-KGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAAS 143

  Fly   134 KKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSC 198
            ||||||||||:||.|:||||||.|||||.|||:.|||||.:|||.|.::|...::.|:..:..|.
Zfish   144 KKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPMVQRNSSF 208

  Fly   199 CTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAE---------RVRQQDGSF-VYRAVNA 253
            .|.:||.|:|.:||||||:|:..|:||||.|:::||..|         .|...||.. :||.||.
Zfish   209 ATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVNP 273

  Fly   254 PLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293
            .:.|||||:.|||:|||..:|...|:::...|.||.:|||
Zfish   274 IIQPTGLVKTPCGLCPVFDDCHEGGEISPSNCVYMAEWLD 313

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3F	NP_651029.1	RNA_pol_Rpc34	6..293	CDD:413207	147/296 (50%)
polr3f	NP_957481.1	RNA_pol_Rpc34	12..313	CDD:398703	147/298 (49%)