Protein Alignment Polr3F and rpc34

DIOPT Version :10

• Sequence 1: NP_651029.1
• Gene: Polr3F / 42619
• FlyBaseID: FBgn0038951
• Length: 293
• Species: Drosophila melanogaster
• Sequence 2: NP_588398.1
• Gene: rpc34 / 2538992
• PomBaseID: SPCC290.02
• Length: 301
• Species: Schizosaccharomyces pombe
• Alignment Length: 286
• Identity: 95/286 - (33%)
• Similarity: 163/286 - (56%)
• Gaps: 15/286 - (5%)

  Fly    16 IPAGATNDDLTKAL-PDVPAATRVEALNILLQEGGIEILKKGEKLVYRA-KDPEKKSALPKDADN 78
            ||...:..||.:|: ..:.......||||||....::.|::|..||||| :..|.|:....:.|
pombe    23 IPNSLSQQDLVEAIGASISVNDLSSALNILLSRRLLDPLRQGNVLVYRAVRLDEAKTVSTMEGD- 86

  Fly    79 EEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNL 143
             |::||..::..||:|||.:.:.:::||::..:::.||:||:|.|:|::|||....:|:||||:|
pombe    87 -EQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDL 150

  Fly   144 EPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGP-LAF--KQMSCCTVNEVQ 205
            .|...:|||.|:.||:.:|||::.|.:...|::..|....:|...|| |.:  :.....|..::.
pombe   151 VPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYPTALQIH 215

  Fly   206 KFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAV---NAPLPPTGLVQMPCGI 267
            .::....|:||:|:.|::.:::..::|||..|  ::.||: .|||:   |..:  ....:.|||.
pombe   216 NWLRSTNITKVDLSLANVISLVDVLIYDGKVE--KRSDGA-SYRAIRVNNENI--DAFTESPCGN 275

  Fly   268 CPVIKNCSNCGDVTAITCEYMRDWLD 293
            |||...|.....|..|||||:..||:
pombe   276 CPVSDICDANSRVNPITCEYLDKWLN 301

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr3F	NP_651029.1	RNA_pol_Rpc34	6..293	CDD:413207	94/284 (33%)
rpc34	NP_588398.1	RPC34	1..301	CDD:227442	94/284 (33%)