DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PSR and jmjd4

DIOPT Version :9

Sequence 1:NP_001262832.1 Gene:PSR / 42616 FlyBaseID:FBgn0038948 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001070096.1 Gene:jmjd4 / 767690 ZFINID:ZDB-GENE-060929-636 Length:422 Species:Danio rerio


Alignment Length:373 Identity:99/373 - (26%)
Similarity:155/373 - (41%) Gaps:66/373 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 FTDNLERIEESQVPESEFIERFERPYKPVVI-RGCTDGWLALEKW-------TLARLAKKY---- 99
            |.:.:||    ::|.|:|.:.:..|.:|.:. :..|:.|...:||       .|.||..::    
Zfish    28 FIEYIER----EIPYSKFFKNYLIPNQPCMFSKKFTEEWNCRKKWVTAEGKPNLQRLLHEFDETP 88

  Fly   100 ---RNQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDD---SP---LYIFD----SSFGEHHRRRKL 151
               .|...|  |.|......|..|.:::|.:.:..:   ||   ||:.|    .:|.||      
Zfish    89 VPVANCSVK--EYNANPKQIMPFKEFIQYWRESIQNGHSSPKGCLYLKDWHMQRNFPEH------ 145

  Fly   152 LDDYVVPKYFRDD-LFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFP 215
             :.|..|.||..| |.:|........||:..|||..|.|..|.|...:.:|:..|.|.|:|.|:|
Zfish   146 -NIYKTPIYFSSDWLNEYWDTIEVDDYRFVYMGPKGSWTPFHADVFRSYSWSANICGRKKWLLYP 209

  Fly   216 TQTPKELLKVTSAMGGKQRD--EAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGETVFVPGGWWH 278
               |.:...:....|....|  ..|.....:|.:     :.|..:|:|::|.|||.:|||.||.|
Zfish   210 ---PGQEDFLRDCHGNLAYDVTAPILQDKGLYAQ-----FEEACQPLEIIQEAGEIIFVPSGWHH 266

  Fly   279 VVLNMDDTIAITQNFSSQTNFPCVWHKTVRGRPKLSR---KWLRVLRDQRPELAQI----ADSIN 336
            .|.|::|||:|..|:.:..|...:|.........:.|   :| |...|...:..|:    ...|:
Zfish   267 QVYNLEDTISINHNWLNGCNLDIMWQFLQDELSSVQREIEEW-RDTMDTWHQHCQVIMKSCTGID 330

  Fly   337 LNESTGFASDSSSNSSSSSSSSSSSSEEEESDDGGDSNTDSGQESLTA 384
            ..|...|....::|..|..:||..::         ||..|...|||.|
Zfish   331 YAEFASFLKTIANNRISFLNSSPRNA---------DSCQDLLAESLCA 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSRNP_001262832.1 JmjC 179..293 CDD:202224 38/115 (33%)
jmjd4NP_001070096.1 cupin_like 38..281 CDD:304367 73/259 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D369628at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.