DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSR and jmjd6

DIOPT Version :9

Sequence 1:NP_001262832.1 Gene:PSR / 42616 FlyBaseID:FBgn0038948 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_739567.3 Gene:jmjd6 / 266962 ZFINID:ZDB-GENE-040426-17 Length:403 Species:Danio rerio


Alignment Length:409 Identity:264/409 - (64%)
Similarity:317/409 - (77%) Gaps:10/409 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RSRKRTREVKRKARPELDGENAWSAMRYCEKFE-PFWDFTDNLERIEESQVPESEFIERFERPYK 73
            :|:||.:|.||.|||||...:.|:...||:.|: ......||:||.:..::...|||:|||:|||
Zfish     4 KSKKRIKEAKRSARPELKDSSDWTKHEYCKSFDLSHRSVKDNVERADVQRLSPEEFIQRFEKPYK 68

  Fly    74 PVVIRGCTDGWLALEKWTLARLAKKYRNQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDDSPLYIF 138
            |||:....|.|.|.|||||.||.:|||||||||||||:||||||||||||||::||.||||||||
Zfish    69 PVVLLNVEDSWPAREKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYVEYLESTHDDSPLYIF 133

  Fly   139 DSSFGEHHRRRKLLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSAWNT 203
            |||||||.:|||||:||.||.:|||||||:.||.||||||||||||||||||||||||||||||.
Zfish   134 DSSFGEHAKRRKLLEDYQVPLFFRDDLFQFAGEKRRPPYRWFVMGPARSGTGIHIDPLGTSAWNA 198

  Fly   204 LIRGHKRWCLFPTQTPKELLKVTSAMGGKQRDEAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGE 268
            |::||||||||||.||:||:|||...||.|:|||||||:.||||||..:||:::||:|:||..||
Zfish   199 LVQGHKRWCLFPTHTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQQSTWPDEFRPLEILQRPGE 263

  Fly   269 TVFVPGGWWHVVLNMDDTIAITQNFSSQTNFPCVWHKTVRGRPKLSRKWLRVLRDQRPELAQIAD 333
            ||||||||||||||:|.|||:||||:|.||||.||||||||||||||||.|:|:.:||::|.|||
Zfish   264 TVFVPGGWWHVVLNLDTTIAVTQNFASTTNFPIVWHKTVRGRPKLSRKWYRILKQERPDIAAIAD 328

  Fly   334 SINLNESTGFASDSSSNSSSSSSSSSSSSEEEESDDGGDSNTDSGQESLTAKKKKKRRMAGGGSG 398
            .::|.||||.||||||:||||||||||.|         ||..|||.|......::|:|..||..|
Zfish   329 KVDLQESTGIASDSSSDSSSSSSSSSSDS---------DSEADSGSEGDAMTHRRKKRRTGGMMG 384

  Fly   399 SGSMGGSSRSXSRERAKRK 417
            :|.:.......|:||:..:
Zfish   385 NGDITSQDDCASKERSSSR 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSRNP_001262832.1 JmjC 179..293 CDD:202224 87/113 (77%)
jmjd6NP_739567.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 11/18 (61%)
Nuclear localization signal 1. /evidence=ECO:0000250|UniProtKB:Q6NYC1 6..10 2/3 (67%)
Nuclear localization signal 2. /evidence=ECO:0000250|UniProtKB:Q6NYC1 91..95 1/3 (33%)
Nuclear localization signal 3. /evidence=ECO:0000250|UniProtKB:Q6NYC1 141..145 1/3 (33%)
Nuclear localization signal 4. /evidence=ECO:0000250|UniProtKB:Q6NYC1 167..170 1/2 (50%)
JmjC 174..288 CDD:202224 87/113 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 335..403 35/76 (46%)
Nuclear localization signal 5. /evidence=ECO:0000250|UniProtKB:Q6NYC1 373..378 1/4 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170583936
Domainoid 1 1.000 236 1.000 Domainoid score I2287
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9046
Inparanoid 1 1.050 560 1.000 Inparanoid score I1064
OMA 1 1.010 - - QHG58658
OrthoDB 1 1.010 - - D369628at33208
OrthoFinder 1 1.000 - - FOG0005710
OrthoInspector 1 1.000 - - oto38643
orthoMCL 1 0.900 - - OOG6_101565
Panther 1 1.100 - - LDO PTHR12480
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3963
SonicParanoid 1 1.000 - - X4108
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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