DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSR and Jmjd6

DIOPT Version :9

Sequence 1:NP_001262832.1 Gene:PSR / 42616 FlyBaseID:FBgn0038948 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001350292.1 Gene:Jmjd6 / 107817 MGIID:1858910 Length:420 Species:Mus musculus


Alignment Length:435 Identity:261/435 - (60%)
Similarity:309/435 - (71%) Gaps:51/435 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RSRKRTREVKRKARPELDGENAWSAMRYCEKFE------PFWDFTDNLERIEESQVPESEFIERF 68
            :|:||.||.||.|||||.....|:...|.|.:.      |     ||:||.:..|:...||:||:
Mouse     4 KSKKRIREAKRSARPELKDSLDWTRHNYYESYPLNPAAVP-----DNVERADALQLSVKEFVERY 63

  Fly    69 ERPYKPVVIRGCTDGWLALEKWTLARLAKKYRNQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDDS 133
            ||||||||:....:||.|.|||||.||.:|||||||||||||:|||||||||||:|||:||||||
Mouse    64 ERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDDS 128

  Fly   134 PLYIFDSSFGEHHRRRKLLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGT 198
            ||||||||:|||.:|||||:||.|||:|.||||||.||.||||||||||||.|||||||||||||
Mouse   129 PLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGT 193

  Fly   199 SAWNTLIRGHKRWCLFPTQTPKELLKVTSAMGGKQRDEAITWFSTIYPRTQLPSWPEQYRPIEVL 263
            ||||.|::||||||||||.||:||:|||...||.|:|||||||:.||||||||:||.:::|:|:|
Mouse   194 SAWNALVQGHKRWCLFPTNTPRELIKVTREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEIL 258

  Fly   264 QGAGETVFVPGGWWHVVLNMDDTIAITQNFSSQTNFPCVWHKTVR-------------------- 308
            |..||||||||||||||||:|.||||||||:|.||||.|||||::                    
Mouse   259 QKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTIQHGQRQCKPPPATPCHCVPTL 323

  Fly   309 -GRPKLSRKWLRVLRDQRPELAQIADSINLNESTGFASDSSSNSSSSSSSSSSSSEEE-ESDDGG 371
             .|.:||    .:|:.:.||||.:||:::|.||||.||||||:||||||||||.|:.| ||...|
Mouse   324 TWRDQLS----GILKQEHPELAVLADAVDLQESTGIASDSSSDSSSSSSSSSSDSDSECESGSEG 384

  Fly   372 DSNTDSGQESLTAKKKKKRR---MAGGG--SGSGSMGGSSRSXSR 411
            |.         |..::||||   |.|.|  :.........||.||
Mouse   385 DG---------TTHRRKKRRTCSMVGNGDTTSQDDCVSKERSSSR 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSRNP_001262832.1 JmjC 179..293 CDD:202224 88/113 (78%)
Jmjd6NP_001350292.1 JmjC 174..288 CDD:202224 88/113 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839843
Domainoid 1 1.000 236 1.000 Domainoid score I2337
eggNOG 1 0.900 - - E1_KOG2130
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9046
Inparanoid 1 1.050 554 1.000 Inparanoid score I1109
Isobase 1 0.950 - 0 Normalized mean entropy S2343
OMA 1 1.010 - - QHG58658
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005710
OrthoInspector 1 1.000 - - oto94440
orthoMCL 1 0.900 - - OOG6_101565
Panther 1 1.100 - - LDO PTHR12480
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3963
SonicParanoid 1 1.000 - - X4108
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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