DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PSR and jmjd4

DIOPT Version :9

Sequence 1:NP_001262832.1 Gene:PSR / 42616 FlyBaseID:FBgn0038948 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_004915583.1 Gene:jmjd4 / 100491509 XenbaseID:XB-GENE-1007413 Length:423 Species:Xenopus tropicalis


Alignment Length:291 Identity:80/291 - (27%)
Similarity:116/291 - (39%) Gaps:62/291 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 LERIEESQ-VPESEFIERFERPYKPVVIRG-CTDGWLALEKWTLA-------RLAKKYRNQKFKC 106
            ::.|||.| ...|||..::.....|.:... .|..|.:.:.|...       .|.:.:.|.....
 Frog     9 IDFIEEPQSFDYSEFFNKYLLTNSPCLFSAKFTQHWGSRKTWVTEENKPNWDHLLENFGNAIVPV 73

  Fly   107 GEDNEGYSVKMKMKYYVEYMQSTRDDSPLYIFDS---SFGEH--------------HRRRKLLDD 154
            ...|    ||       ||..:.::..||..|.|   .:.||              |.||:..:.
 Frog    74 ANCN----VK-------EYNSNPKEQIPLRDFISYWRDYAEHNCCSPRGCLYLKDWHMRREFPEQ 127

  Fly   155 --YVVPKYFRDD-LFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSAWNTLIRGHKRWCLFPT 216
              |..|:||..| |.:|........||:..|||..|.|..|.|...:.:|:..:.|.|:|.|||.
 Frog   128 NVYETPEYFASDWLNEYWDAIDGDDYRFVYMGPKGSWTPFHADVFRSYSWSANVCGRKKWLLFPP 192

  Fly   217 QTPKEL--------LKVTSAMGGKQRDEAITWFSTIYPRTQLPSWPEQYRPIEVLQGAGETVFVP 273
            ...:.|        ..||||   ..||.           .|.|...:..||.||:|.||:.:|:|
 Frog   193 GQEEHLRDSHGNLPYDVTSA---GLRDP-----------IQYPHLSQCCRPSEVIQEAGQVIFIP 243

  Fly   274 GGWWHVVLNMDDTIAITQNFSSQTNFPCVWH 304
            .||.|.|.|::|||:|..|:.:..|...:|:
 Frog   244 SGWHHQVYNLEDTISINHNWINGCNVSAMWN 274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSRNP_001262832.1 JmjC 179..293 CDD:202224 41/121 (34%)
jmjd4XP_004915583.1 cupin_RmlC-like 21..263 CDD:424065 73/266 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D369628at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.