DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sar1 and srprb

DIOPT Version :9

Sequence 1:NP_732717.1 Gene:Sar1 / 42615 FlyBaseID:FBgn0038947 Length:193 Species:Drosophila melanogaster
Sequence 2:NP_989042.2 Gene:srprb / 394639 XenbaseID:XB-GENE-952557 Length:264 Species:Xenopus tropicalis


Alignment Length:180 Identity:47/180 - (26%)
Similarity:73/180 - (40%) Gaps:40/180 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VLGYLGLWK-------KSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVPTLHPTSEELSIGNMR-- 65
            ||.:: |||       ....:|.:|:.::|||.|.:.|......:...::........:.|.:  
 Frog    41 VLSFV-LWKILRGSRTSRRAVLLIGVCDSGKTLLFNRLLTGTYKKTQTSITANCAAYKVKNDKGS 104

  Fly    66 -FTTFDLGGHTQAR-RVWKDYFPAVDAIVFLIDAWDRGRFQESKNELD----SLLTDEA-LSNC- 122
             .|..||.||...| :..:.|..:..|::|::|:   ..||....|:.    .||||.| |.|. 
 Frog   105 SLTLVDLPGHESLRLQFLEQYKASARALLFVVDS---SAFQREVKEVAELFYQLLTDVAILKNVP 166

  Fly   123 PVLILGNKIDKPGAAS--------EDELRNVFGLYQLTTGKGKVARADLP 164
            |:||..||.|...|.|        |.||..:           :|.|:..|
 Frog   167 PILIACNKQDISMAKSAKLIQQQLEKELNTL-----------RVTRSAAP 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sar1NP_732717.1 Sar1 2..192 CDD:206645 47/180 (26%)
srprbNP_989042.2 SRPRB 55..234 CDD:370490 42/165 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.