DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sar1 and gpa-18

DIOPT Version :9

Sequence 1:NP_732717.1 Gene:Sar1 / 42615 FlyBaseID:FBgn0038947 Length:193 Species:Drosophila melanogaster
Sequence 2:NP_001293719.1 Gene:gpa-18 / 189161 WormBaseID:WBGene00020997 Length:320 Species:Caenorhabditis elegans


Alignment Length:86 Identity:24/86 - (27%)
Similarity:42/86 - (48%) Gaps:11/86 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 EELSIGNMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDA--------WDRGRFQESK--NELD 111
            |.::....:|...::.||...|..|.|||...:.:||:||.        :::| :.|:|  ...:
 Worm   160 ENVTCQGYKFELLEMPGHHLWRAKWADYFDDPNLVVFVIDLSELCDPAFYNKG-YLENKTVTVFE 223

  Fly   112 SLLTDEALSNCPVLILGNKID 132
            ||:.:..|:....|:|.||.|
 Worm   224 SLVNNPVLAKVYWLLLFNKAD 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sar1NP_732717.1 Sar1 2..192 CDD:206645 24/86 (28%)
gpa-18NP_001293719.1 G-alpha 12..309 CDD:278904 24/86 (28%)
P-loop_NTPase 12..289 CDD:304359 24/86 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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