DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sar1 and arf-1

DIOPT Version :9

Sequence 1:NP_732717.1 Gene:Sar1 / 42615 FlyBaseID:FBgn0038947 Length:193 Species:Drosophila melanogaster
Sequence 2:NP_001367325.1 Gene:arf-1 / 175801 WormBaseID:WBGene00000182 Length:181 Species:Caenorhabditis elegans


Alignment Length:188 Identity:56/188 - (29%)
Similarity:96/188 - (51%) Gaps:21/188 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDKLAQHVPTLHPTSEELSIGNMRFTTFDL 71
            |.|:.|     |:..::|.:|||.|||||:|:.||..::...:||:....|.:...|:.||.:|:
 Worm     9 FKGLFG-----KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68

  Fly    72 GGHTQARRVWKDYFPAVDAIVFLIDAWDRGRFQESKNELDSLLTDEALSNCPVLILGNKIDKPGA 136
            ||..:.|.:|:.||.....::|::|:.||.|..|::.||..:|.::.|.:..:|:..||.|.|.|
 Worm    69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQA 133

  Fly   137 ASEDELRNVFGLYQLTTGKGKVARADLPGRPLELFMCSVLKRQGYG--EGFRWLAQYI 192
            .:..|:.:..||:.|              |....::.:.....|.|  ||..||:..:
 Worm   134 MNAAEVTDKLGLHSL--------------RNRSWYIQATCATSGDGLYEGLDWLSNQL 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sar1NP_732717.1 Sar1 2..192 CDD:206645 56/186 (30%)
arf-1NP_001367325.1 P-loop_NTPase 5..179 CDD:422963 56/188 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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