DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sar1 and arc-1

DIOPT Version :10

Sequence 1:NP_732717.1 Gene:Sar1 / 42615 FlyBaseID:FBgn0038947 Length:193 Species:Drosophila melanogaster
Sequence 2:NP_496089.3 Gene:arc-1 / 174525 WormBaseID:WBGene00000180 Length:539 Species:Caenorhabditis elegans


Alignment Length:115 Identity:40/115 - (34%)
Similarity:66/115 - (57%) Gaps:5/115 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 KLLFLGLDNAGKTTLLHMLK----DDKLAQHVPTLHPTSEELSIGNMRFTTFDLGGHTQARRVWK 82
            :::.||||.||||:::..||    |..:|.| ||:....|.:...|.|...:|:||..:.|.:||
 Worm   371 RVVLLGLDGAGKTSIVRRLKKVQMDTVMAPH-PTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWK 434

  Fly    83 DYFPAVDAIVFLIDAWDRGRFQESKNELDSLLTDEALSNCPVLILGNKID 132
            .|:....||.::||.:...||.|:..||:.:::|..:..|||::..|:.|
 Worm   435 HYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKD 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sar1NP_732717.1 Sar1 2..192 CDD:206645 40/115 (35%)
arc-1NP_496089.3 mRING-HC-C3HC3D_arc-1-like 3..56 CDD:438486
Bbox2_TRIM23_C-IX_rpt1 104..153 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 156..205 CDD:380832
BBC 208..339 CDD:128778
Arf_Arl 371..526 CDD:206644 40/115 (35%)
Blue background indicates that the domain is not in the aligned region.

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