DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdhB and CBR4

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:XP_006714454.1 Gene:CBR4 / 84869 HGNCID:25891 Length:247 Species:Homo sapiens


Alignment Length:247 Identity:58/247 - (23%)
Similarity:107/247 - (43%) Gaps:42/247 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRDQVTGVGKIFARQCDLNDEEQLA 73
            :||..|.|.|.|||...|..:|..|..:..:||.:|..:|....:.|....|:  ||:..|..:.
Human     2 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAFS--CDVAKEHDVQ 64

  Fly    74 SAFNWIREKFQAIHVLICNAGILKANFLSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRG 138
            :.|..:.:....::.|:..|||.:...|..:.|:|:.....||::.:....:.|::.|  ::.:|
Human    65 NTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTM--IQQQG 127

  Fly   139 HIVVMNSVLGHRIPEV-----PVPL-----FSVYPATKHAITALCQTVRQEIHFLKLNIKLTSIC 193
            ..:|.   :|||...:     .|.|     .|||.|:|..:....:.:.:|:  .:..|::..:.
Human   128 GSIVN---VGHRREMLLHKRSIVGLKGNSGQSVYSASKGGLVGFSRALAKEV--ARKKIRVNVVA 187

  Fly   194 PGMVDTDF--------------LSVYSQAVAELPKLQARDVAKAVLYALNTP 231
            ||.|.||.              |..:.:.:         :||.||::.|.:|
Human   188 PGFVHTDMTKDLKEEHLKKNIPLGRFGETI---------EVAHAVVFLLESP 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 58/247 (23%)
CBR4XP_006714454.1 Rossmann-fold NAD(P)(+)-binding proteins 3..243 CDD:473865 58/246 (24%)

Return to query results.
Submit another query.