DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and AT5G61830

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_200991.1 Gene:AT5G61830 / 836305 AraportID:AT5G61830 Length:316 Species:Arabidopsis thaliana


Alignment Length:248 Identity:59/248 - (23%)
Similarity:105/248 - (42%) Gaps:52/248 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ENNFYWR-NKVAVVTGASVGIGATTAIELANAGMVVVGLARRV----ELIEALRDQVTGVGKIFA 61
            :::.:|. ..||||||::.|||...|.:||..|:.||..||.|    |.:::||.|..|: |::.
plant    28 DHHRWWSCENVAVVTGSNRGIGFEIARQLAVHGLTVVLTARNVNAGLEAVKSLRHQEEGL-KVYF 91

  Fly    62 RQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANFLSESPTKDIKELFDTNVVATASCLRE 126
            .|.|:.|...:.....|:::.|..:.:|:.|||: ..|..|::..:..:.:..||...|.:..:.
plant    92 HQLDVTDSSSIREFGCWLKQTFGGLDILVNNAGV-NYNLGSDNTVEFAETVISTNYQGTKNMTKA 155

  Fly   127 ALKHMAAVKVRGHIVVMNSVLG------HRIPEVPV----------------------------- 156
            .:..|........:|.::|.||      :|:..|.:                             
plant   156 MIPLMRPSPHGARVVNVSSRLGRVNGRRNRLANVELRDQLSSPDLLTEELIDRTVSKFINQVKDG 220

  Fly   157 --------PLFSVYPATKHAITALCQTVRQEIHFL--KLNIKLTSICPGMVDT 199
                    ..|:.|..:|.|:.|..:.:.:|:...  :..|.:.|.|||.|.|
plant   221 TWESGGWPQTFTDYSMSKLAVNAYTRLMAKELERRGEEEKIYVNSFCPGWVKT 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 59/246 (24%)
AT5G61830NP_200991.1 carb_red_PTCR-like_SDR_c 38..316 CDD:187585 58/238 (24%)

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