DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and NOL

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_568145.1 Gene:NOL / 830372 AraportID:AT5G04900 Length:348 Species:Arabidopsis thaliana


Alignment Length:228 Identity:62/228 - (27%)
Similarity:113/228 - (49%) Gaps:26/228 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VVTGASVGIGATTAIELANAGMVVVGLARRVELIE-ALRDQVTGVGK-IFARQCDLNDEEQLASA 75
            ::||::.|||...|.|...||..||..:|..|.:| |::......|: ::..:||:.:.:.:...
plant    83 LITGSTKGIGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGEHVWGTKCDVTEGKDVREL 147

  Fly    76 FNWIREKFQAIHVLICNAGILKANF--LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRG 138
            ..:.::..:.|.:.|.|||....:|  |:|:..:|:.|:..||.:....|.|||:..|......|
plant   148 VAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDEDLIEVVKTNTLGLMLCCREAMNMMLTQSRGG 212

  Fly   139 HIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKL-NIKLTSICPGMVDTD-- 200
            ||.   ::.|......|.|.|:.|.|||.::..|.::::.|:....: |:.:.::.||||.||  
plant   213 HIF---NIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLL 274

  Fly   201 -----------FLSVY---SQAVAE--LPKLQA 217
                       |::|.   ::.|||  :|.::|
plant   275 MSGATTKQAKFFINVLAEPAEVVAEYLVPNIRA 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 62/228 (27%)
NOLNP_568145.1 PLN02657 17..>140 CDD:178263 18/56 (32%)
SDR_c 82..302 CDD:212491 60/221 (27%)

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