DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and NYC1

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_567400.1 Gene:NYC1 / 826942 AraportID:AT4G13250 Length:496 Species:Arabidopsis thaliana


Alignment Length:284 Identity:70/284 - (24%)
Similarity:125/284 - (44%) Gaps:47/284 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELI------------------- 46
            :|:::....:..|:||::.|:|...|.|...:|..|:..:|..|.:                   
plant   153 LEDHYRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNAS 217

  Fly    47 EALRDQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKA-NFLSESPTKDIK 110
            |:.|.:::. .|:....||:...|.:....|:..::..:|::.|.|||..|. ..|.|...:||.
plant   218 ESARKKLSD-AKVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDIT 281

  Fly   111 ELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQT 175
            ::..||::.:..|.|.|:..|:.....|||..|:   |........||.:||.:||..:.....:
plant   282 QIVSTNLIGSILCTRGAMDVMSRQHSGGHIFNMD---GAGSGGSSTPLTAVYGSTKCGLRQFHGS 343

  Fly   176 VRQEIHFLKLNIKLTSICPGMVDTDFL----SVYSQ----AVAELPKLQARDV----------AK 222
            :.:|..  |.|:.|.:..||||.|:.|    |:.::    .:.|||:..||.:          .|
plant   344 IVKESQ--KTNVGLHTASPGMVLTELLLSGSSIKNKQMFNIICELPETVARTLVPRMRVVKGSGK 406

  Fly   223 AVLYALNTPDGVQVEDIILQQMRK 246
            ||.|.  ||..:.:. |:...:|:
plant   407 AVNYL--TPPRILLA-IVTSWLRR 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 68/277 (25%)
NYC1NP_567400.1 SDR_c 164..395 CDD:212491 61/236 (26%)

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