DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and HSD5

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_192740.1 Gene:HSD5 / 826593 AraportID:AT4G10020 Length:389 Species:Arabidopsis thaliana


Alignment Length:190 Identity:49/190 - (25%)
Similarity:83/190 - (43%) Gaps:21/190 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 NNFY----WRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRDQVTGVG--KIFA 61
            |:::    ..:||.|:||||..||...|.|.|..|..:|.:|||.:.:..:.::...:|  .:..
plant    39 NSYFATENMEDKVVVITGASSAIGEQIAYEYAKRGANLVLVARREQRLRVVSNKAKQIGANHVII 103

  Fly    62 RQCDLNDEEQ----LASAFNWIREKFQAIHVLICNAGILKANFLSE-SPTKDIKELFDTNVVATA 121
            ...|:..|:.    :..|.|:    :..:..|:..|.:....:..| |.|.....|.|.|.....
plant   104 IAADVIKEDDCRRFITQAVNY----YGRVDHLVNTASLGHTFYFEEVSDTTVFPHLLDINFWGNV 164

  Fly   122 SCLREALKHMAAVKVRGHIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQTVRQEIH 181
            .....||.::.  :..|.|||..||...    :|:|..|:|.|.|.|:....:|:|.|::
plant   165 YPTYVALPYLH--QTNGRIVVNASVENW----LPLPRMSLYSAAKAALVNFYETLRFELN 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 48/189 (25%)
HSD5NP_192740.1 Rossmann-fold NAD(P)(+)-binding proteins 47..303 CDD:473865 48/182 (26%)
Extensin_2 343..>379 CDD:252669
Blue background indicates that the domain is not in the aligned region.

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