DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdhB and cbr4

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_001007873.1 Gene:cbr4 / 493259 XenbaseID:XB-GENE-5935857 Length:236 Species:Xenopus tropicalis


Alignment Length:229 Identity:63/229 - (27%)
Similarity:113/229 - (49%) Gaps:19/229 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRDQVTGVGKIFARQCDLNDEEQLAS 74
            ||..|.|.|.|||...:..||.....|..::|.:|:.:|...:   ||...|..||::.|.::..
 Frog     3 KVCAVFGGSRGIGKAVSKLLAQRDYKVAVISRDLEVAKAAAAE---VGAHLALSCDVSKENEIQD 64

  Fly    75 AFNWIREKFQAIHVLICNAGILKANFLSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGH 139
            .|..|......:..|:.:|||.:...|..:.::||:.|...|:|.|....:.||:.|.. :..|.
 Frog    65 TFKEITNNLGNVDYLVNSAGIRRDALLLRTRSEDIRSLLSVNLVGTIQTCKLALRSMIQ-QQGGA 128

  Fly   140 IVVMNSVLGHR--IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTDF- 201
            ||.:.|::||:  |.:      |:|.|:|..:....:::.:|:  .|.||::..:.||.:.||. 
 Frog   129 IVNIGSIVGHKGNIGQ------SIYGASKEGLIGFSKSLAKEV--AKRNIRVNVVAPGFIHTDMT 185

  Fly   202 LSVYSQAVAELPKL----QARDVAKAVLYALNTP 231
            |.:...::.::..|    ...:||::||:.|.:|
 Frog   186 LGLEEDSLTKMVPLGRFGDPEEVAQSVLFLLESP 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 63/229 (28%)
cbr4NP_001007873.1 Rossmann-fold NAD(P)(+)-binding proteins 3..232 CDD:473865 63/229 (28%)

Return to query results.
Submit another query.