DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdhB and CG8757

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_648664.2 Gene:CG8757 / 39528 FlyBaseID:FBgn0036380 Length:252 Species:Drosophila melanogaster


Alignment Length:245 Identity:96/245 - (39%)
Similarity:149/245 - (60%) Gaps:11/245 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 WRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRD--QVTGVGKIFARQCDLNDE 69
            |.||||||:|||.||||.....|..|||:|||||||.|.:|.||.  .:....::.|.:||:..|
  Fly     4 WCNKVAVVSGASAGIGAACTRALIGAGMIVVGLARRHERVEKLRSGLSLEQQSRLHAIKCDITQE 68

  Fly    70 EQLASAFNWIREKFQAIHVLICNAGILKANFLSE---SPTKDIKELFDTNVVATASCLREALKHM 131
            :|:..||:|...:...:.||:.||||:....|||   .|.  ::...:||::.|..|:||:.:.|
  Fly    69 DQVLKAFDWTCRQLGGVDVLVSNAGIIGTGELSERDDGPA--MRSTIETNIMGTVYCVRESFRSM 131

  Fly   132 AAVKVRGHIVVMNSVLGHRIPEV--PVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICP 194
            ......||:|::|||.|:::|.:  .:|..::|||||.|:.|:.:..|||....|..::::::.|
  Fly   132 KRRGTEGHVVIVNSVAGYQVPNLGPQLPSLNIYPATKFALRAMNEIYRQEFQRHKTAVRVSTVSP 196

  Fly   195 GMVDTDFLSVYSQAVAE--LPKLQARDVAKAVLYALNTPDGVQVEDIILQ 242
            |:|||..|....|.:.:  :|.|::.|||.|||:|:.||..|||.:|.::
  Fly   197 GIVDTVILPEQIQGIIKQHMPMLRSDDVADAVLWAIGTPPNVQVHNITIK 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 96/245 (39%)
CG8757NP_648664.2 Rossmann-fold NAD(P)(+)-binding proteins 1..247 CDD:473865 96/245 (39%)

Return to query results.
Submit another query.