DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and CG40486

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_001036311.2 Gene:CG40486 / 3355162 FlyBaseID:FBgn0263830 Length:247 Species:Drosophila melanogaster


Alignment Length:243 Identity:89/243 - (36%)
Similarity:147/243 - (60%) Gaps:8/243 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 WRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRDQVTG--VGKIFARQCDLNDE 69
            |.::||||||||.||||..|..|.:||::||||||||:.::|:::|:..  .|::.|..||:.|.
  Fly     4 WHDRVAVVTGASSGIGAAVARHLVSAGVIVVGLARRVDRMKAIKEQLPPELQGRLHAIHCDVEDL 68

  Fly    70 EQLASAFNWIREKFQAIHVLICNAGILKANFLSESPTKDIKELFDTNVVATASCLREALKHMAAV 134
            :.:.:||:||.|:.....:|:.|||.|....|.....:.::::.:.|::....|.|.|.:.|...
  Fly    69 DSVTAAFDWIEEQLGGCDILVNNAGCLNPGQLLTLELEQLQQVLNVNLMGVVICTRRAFRSMQQR 133

  Fly   135 KVRGHIVVMNSVLGHRIPEVP---VPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGM 196
            :|.||::::||:.|..|...|   :.:.::||.|||.:||:.:.:|||:...|..||:|||.||:
  Fly   134 EVDGHVILINSLTGRNIINPPGDELQVLNMYPLTKHGVTAMLEVLRQELRGFKTKIKVTSITPGV 198

  Fly   197 VDTDFLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQM 244
            .||:.|   ......||.|:..|:|..::|.|.||..|||.::.::.:
  Fly   199 TDTEIL---PSGYGILPMLKPDDIAAGIMYVLGTPAHVQVHELTIKPL 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 89/241 (37%)
CG40486NP_001036311.2 Rossmann-fold NAD(P)(+)-binding proteins 1..242 CDD:473865 89/240 (37%)

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