DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and SPOM_SPCC162.03

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_588241.1 Gene:SPOM_SPCC162.03 / 2539382 PomBaseID:SPCC162.03 Length:292 Species:Schizosaccharomyces pombe


Alignment Length:209 Identity:58/209 - (27%)
Similarity:101/209 - (48%) Gaps:27/209 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR--DQVT-GVGKIFAR 62
            |::.|    ...::||:|.|:|         ..:|.||||:...:|...|  |.:| ...|:...
pombe     1 MKSTF----STVLITGSSKGLG---------YALVKVGLAQGYNVIACSRAPDTITIEHSKLLKL 52

  Fly    63 QCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANFLSESPTKDIKEL---FDTNVVATASCL 124
            :.|:.|.:.:.:||...:.:|..:.::|.|||.   ..:.|..:.:|:|:   .:.|....|...
pombe    53 KLDVTDVKSVETAFKDAKRRFGNVDIVINNAGY---GLVGEFESYNIEEMHRQMNVNFWGVAYIT 114

  Fly   125 REALKHMAAVKVRGHIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKL 189
            :|||..|......|.|:.::||.|:    .|.|..|:|.|:|.|:..|.||:.:|:. ...||.:
pombe   115 KEALNLMRESGKGGRILQISSVAGY----YPSPCLSMYNASKFAVEGLSQTIMRELD-PNWNIAI 174

  Fly   190 TSICPGMVDTDFLS 203
            |.:.||.:.|::.|
pombe   175 TIVQPGGMQTEWAS 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 57/206 (28%)
SPOM_SPCC162.03NP_588241.1 17beta-HSD-like_SDR_c 7..248 CDD:187632 56/199 (28%)

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