DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and LOC1276185

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:XP_315499.2 Gene:LOC1276185 / 1276185 VectorBaseID:AGAMI1_004101 Length:246 Species:Anopheles gambiae


Alignment Length:241 Identity:103/241 - (42%)
Similarity:151/241 - (62%) Gaps:9/241 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 WRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRDQVT--GVGKIFARQCDLNDE 69
            |..:||||||||.||||.....||||||:|:|||||||.:|.||.|::  ...::.|.:||:..|
Mosquito     4 WTGRVAVVTGASSGIGAAVVQALANAGMIVIGLARRVERVEELRQQLSKQAAQRLHAIRCDVTRE 68

  Fly    70 EQLASAFNWIREKFQAIHVLICNAGILKA--NFLSESPTKDIKELFDTNVVATASCLREALKHMA 132
            |.:.:||:.|.:::..:.|||.||||.:.  |..:......::::.||||:....|.|||.:.|.
Mosquito    69 EDIVAAFDQIEQQYGGVDVLINNAGIARGGINLFTPGNADPLRQVLDTNVMGVVLCSREAFQSMM 133

  Fly   133 AVKVRGHIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMV 197
            ...|.||||.:|||:||.:|  ....|::|||:|.|:|||.:::|.|:......||:|||.||:|
Mosquito   134 RRSVDGHIVQVNSVVGHTVP--AFASFNIYPASKFAVTALTESMRHELRIEGTRIKVTSISPGLV 196

  Fly   198 DTDFLSVYSQ-AVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQ 242
            .|:  :|.|: ...:.|.|:..|:|.||||.|.||..|||.::.::
Mosquito   197 RTE--AVPSELKTGQTPILEPEDIADAVLYVLGTPPRVQVHELTIR 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 103/241 (43%)
LOC1276185XP_315499.2 None

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