DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and LOC1272498

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:XP_311411.4 Gene:LOC1272498 / 1272498 VectorBaseID:AGAMI1_013720 Length:322 Species:Anopheles gambiae


Alignment Length:218 Identity:63/218 - (28%)
Similarity:98/218 - (44%) Gaps:24/218 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RNKVAVVTGASVGIGATTAIELANAGMVVVGLARRV-ELIE------ALRDQVTGVGKIFARQCD 65
            |.||..:||||.|||...||.||..|:.:...||.: ||::      |..:...|...::..:.|
Mosquito    46 RGKVVWITGASSGIGRDLAIALARQGVKLCISARNISELLKVKQACIAQSNGSLGPNDVYVLEMD 110

  Fly    66 LNDEEQLASAFNWIREKFQAIHVLICNAGILKANFLSESPTKDIKELFDTNVVATASCLREALKH 130
            :.........||.:.:.|:.:.:|:.|||..:.........|..:|||:.:|.|..:..|.||..
Mosquito   111 MLHLNHHNDYFNMVLDHFKTVDILVNNAGRSQRAEWGSINIKVDRELFELDVFAVINLSRVALNF 175

  Fly   131 MAAVKVRGHIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPG 195
            .|...::||:||.:|..|    .:..|....|...|||:....:.:|.|..    |:.:|..|||
Mosquito   176 FARNSMKGHLVVTSSTAG----LIGAPNSGTYTGAKHALHGYFEALRNEYP----NVHVTMFCPG 232

  Fly   196 MVDTDFL---------SVYSQAV 209
            ...|:||         :.|:|.|
Mosquito   233 PTATNFLQECFTDTPGAKYNQTV 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 63/218 (29%)
LOC1272498XP_311411.4 None

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