DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdhB and Cbr2

DIOPT Version :10

Sequence 1:NP_651024.1 Gene:rdhB / 42614 FlyBaseID:FBgn0038946 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_031647.1 Gene:Cbr2 / 12409 MGIID:107200 Length:244 Species:Mus musculus


Alignment Length:236 Identity:63/236 - (26%)
Similarity:101/236 - (42%) Gaps:39/236 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALRDQVTGVGKIFARQC-DLNDEEQLASA 75
            |:||||..|||..|...|..:|..||.:.|....:.:|..:..|:..:    | ||.|.:....|
Mouse    10 ALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPV----CVDLGDWDATEKA 70

  Fly    76 FNWIREKFQAIHVLICNAG-ILKANFLSESPTKDIKELFD----TNVVATASCLREALKHMAAVK 135
            ...|    ..:.:|:.||. ::...||..:     ||.||    .|:.:.....:...:.|....
Mouse    71 LGGI----GPVDLLVNNAALVIMQPFLEVT-----KEAFDRSFSVNLRSVFQVSQMVARDMINRG 126

  Fly   136 VRGHIVVMNSVLGHRIPEVPVPLFSVYPATKHAITALCQTVRQEI--HFLKLNIKLTSICPGMVD 198
            |.|.||.::|::.|    |..|....|.:||.|:|.|.:.:..|:  |.:::|    |:.|.:|.
Mouse   127 VPGSIVNVSSMVAH----VTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVN----SVNPTVVL 183

  Fly   199 TDFLSVYSQAVAELPKLQAR----------DVAKAVLYALN 229
            ||.....|.......||:.|          ||..::|:.|:
Mouse   184 TDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLS 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdhBNP_651024.1 Mgc4172-like_SDR_c 4..244 CDD:187601 63/236 (27%)
Cbr2NP_031647.1 XR_like_SDR_c 1..244 CDD:187609 63/236 (27%)

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