DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34377 and SKIP

DIOPT Version :10

Sequence 1:NP_001262830.1 Gene:CG34377 / 42608 FlyBaseID:FBgn0263117 Length:453 Species:Drosophila melanogaster
Sequence 2:NP_001262827.1 Gene:SKIP / 42601 FlyBaseID:FBgn0051163 Length:1080 Species:Drosophila melanogaster


Alignment Length:390 Identity:137/390 - (35%)
Similarity:173/390 - (44%) Gaps:145/390 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 NIVCEWLRTIGLAHYGESFLENGYDELEICKQIGEIDLDAIGVDNPSHRGKLLKSVRMLREKGAA 148
            ||||||||.:|||.|.||||:||||:||||||:|:.|||||||:||:||.|||||:|.|||||||
  Fly     5 NIVCEWLRALGLAQYAESFLDNGYDDLEICKQVGDPDLDAIGVENPAHRHKLLKSIRSLREKGAA 69

  Fly   149 IVYVLINDPKALSSSNEILASDCDTPVTMKELEAVMKRHLEADGIRLTAHPYSTPEGKRGYLEGL 213
            .||.::|||.:||.|.|||   |:||.. .|||.|::..||.||:||||||||||          
  Fly    70 SVYFMLNDPNSLSGSMEIL---CETPPN-NELELVLREQLETDGVRLTAHPYSTP---------- 120

  Fly   214 AAHYSKQINMPYDDVLDAIEQVRLSKWKERHVRISTGHTLSRRMAGPSCSGTGLVSSSVMPTSHS 278
                                                                             
  Fly   121 ----------------------------------------------------------------- 120

  Fly   279 QPLYVPGKYLPSSCLSNREENEIYSYTQNDLANRMARNAIDSKSAL------------------- 324
                      ||||||::||:|||.:.....|.|:||..:..:..|                   
  Fly   121 ----------PSSCLSDKEEDEIYGFGYGVFAPRVARGGLTQQQQLLQQQTLQTQQSIQQQQQQM 175

  Fly   325 -----------------------------NLNGMQHSYPGARTNFFYNFSAT-EGRNKHKQRRTV 359
                                         :||.:|.:....|:.:||.|..| |||...|  ||.
  Fly   176 QQQQQQLPIVPGQQQQGPHQHQTLPPNVAHLNFVQQNCLSPRSAYFYEFPPTAEGRETKK--RTT 238

  Fly   360 FHRFLQGLR--QSGDELNATEGMQLK-TNERLRNCSTMKRPEPHQ--DFEKTIQRLKTQKAAQKK 419
            ..|.|:||:  ...|..|...|.|.: .|:|||:...:......|  .||:||.|||.|:|.:||
  Fly   239 LARLLKGLKTVNRRDRNNQQNGAQARAANDRLRHFQMINGGAGGQQHSFEETIHRLKVQEAMRKK 303

  Fly   420  419
              Fly   304  303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34377NP_001262830.1 SAM_superfamily 84..144 CDD:472832 45/59 (76%)
SKIPNP_001262827.1 SAM_Samd5 4..65 CDD:188926 45/59 (76%)
SH3 657..710 CDD:473055
SAM_superfamily 742..800 CDD:472832
Blue background indicates that the domain is not in the aligned region.

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