DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SKIP and SKIP

DIOPT Version :10

Sequence 1:NP_001262827.1 Gene:SKIP / 42601 FlyBaseID:FBgn0051163 Length:1080 Species:Drosophila melanogaster
Sequence 2:XP_061496559.1 Gene:SKIP / 1273929 VectorBaseID:AGAMI1_009562 Length:1234 Species:Anopheles gambiae


Alignment Length:1305 Identity:646/1305 - (49%)
Similarity:725/1305 - (55%) Gaps:428/1305 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAVSNIVCEWLRALGLAQYAESFLDNGYDDLEICKQVGDPDLDAIGVENPAHRHKLLKSIRSLRE 65
            ||||||||||||||||.||||||||||||||||||||||||||||||:|||||.|||||:|.|||
Mosquito     1 MAVSNIVCEWLRALGLGQYAESFLDNGYDDLEICKQVGDPDLDAIGVQNPAHRSKLLKSVRLLRE 65

  Fly    66 KGAASVYFMLNDPNSL----SGSMEILCETPPNNELELVLREQLETDGVRLTAHPYSTP------ 120
            ||||||||.||||.||    |.|:|........:|||.:|:|||:.|||.|||||||||      
Mosquito    66 KGAASVYFQLNDPKSLLSDNSDSLERDSSPLMLSELEALLQEQLKADGVCLTAHPYSTPDGARGH 130

  Fly   121 ----------------------------------------------------------------- 120
                                                                             
Mosquito   131 LEGLASVYCEMLLAPFGEVLSALEEARQRAWSERSPHSSSGGGGLIRGHRGNSCHGGLPNSHSQP 195

  Fly   121 --------PSSCLSDKEEDEIYGFGYGVFAPRVARGGLTQQQQLLQQQTLQTQQSIQQQQQQMQQ 177
                    |||||||||||||||||||||||||||..|..||....||        ||||||.||
Mosquito   196 IYVPGKYSPSSCLSDKEEDEIYGFGYGVFAPRVARTTLQSQQAQPGQQ--------QQQQQQQQQ 252

  Fly   178 QQQQLPIVPGQQQQGPHQHQT---LPPNVAHLNFVQQNCLSPRSAYFYEFPPTAEGRET-KKRTT 238
            ||||      ||||.|.|.||   :|.|.|   .|||:||||||||||||||| :|||| |||||
Mosquito   253 QQQQ------QQQQQPQQSQTSANVPANSA---AVQQSCLSPRSAYFYEFPPT-DGRETSKKRTT 307

  Fly   239 LARLLKGLKTVNRRDRNNQQ----NGAQARAANDRLRHFQMINGGAGGQQHSFEETIHRLKVQEA 299
            |||||:||||||||||:||.    ...|:|:.|:||||||| ||  ||.|.||||||.|||:|||
Mosquito   308 LARLLRGLKTVNRRDRSNQNTTGGTATQSRSQNERLRHFQM-NG--GGPQPSFEETIQRLKIQEA 369

  Fly   300 MRKKEKFQREHEEILRDIRQGLLQMSRGEGRMDDTYMYDEALRTGGGMGIAGLGMPLGVGGNGGG 364
            :|||||||||||||||||||||||:||..  .|||||||:|:..       .:.||         
Mosquito   370 LRKKEKFQREHEEILRDIRQGLLQLSRDS--RDDTYMYDDAVTN-------VMRMP--------- 416

  Fly   365 GGAAHYAVSALHHQGHWYDEPPYESDPDDFLMAGL------------------NCGPAATIQGGR 411
                       |||||||||||||||||||||:|:                  ..||:|||||||
Mosquito   417 -----------HHQGHWYDEPPYESDPDDFLMSGMRQIGAAGYAGDGGGGGDGGGGPSATIQGGR 470

  Fly   412 VRF-SNNRES-TGVISLRSAGDISLPQRGPPRRGLIVPQQPPNPPTIIPLTHARSHDRESGDYAG 474
            |.: :|.||. ..|||||||||||:|||| ||||||||||||||||||||.||||||||||||||
Mosquito   471 VCYTTNGREGPQSVISLRSAGDISIPQRG-PRRGLIVPQQPPNPPTIIPLKHARSHDRESGDYAG 534

  Fly   475 SISDLQSVTSRFSTVSIGTNNCTARYRTLSGGIG-ESPSLSPSPSSDYEDI-------------- 524
            |||||.|||||.|.||||.|||||||||||.|:| ||||.||:|||:|:||              
Mosquito   535 SISDLHSVTSRLSQVSIGMNNCTARYRTLSAGLGDESPSPSPTPSSEYDDILQANALQLQKHLHH 599

  Fly   525 -----------------GVTRG-----HGCLP--------------------------------- 534
                             |.|.|     ..||.                                 
Mosquito   600 HQQLKRLDGGMVGPGQPGSTSGLIGSAASCLVGPAGSSAAVAAAAATVGNSSVGNTSGTVGGSIA 664

  Fly   535 -----------PSLL-------------------------------------------------- 538
                       ||:|                                                  
Mosquito   665 LASGGASGANLPSVLGGTGGAGTDISSASTSNSTATTGGSSGNSSSSASSNNSTSTKNTVNNLKS 729

  Fly   539 --AAKAKKN---------------GLPHGKAN-TICQK-ATVHHSGEMRSSAKEIGAFNENGRNF 584
              |||.:.|               .:.|...| :|.|: |.||||.:.|:|.|:...:....|  
Mosquito   730 LKAAKNRNNLTSSLAAASAASSAAAVSHNNKNLSISQQIALVHHSNDARTSPKDHLLYGGKDR-- 792

  Fly   585 VATKDTSRDFSNSQDNTDRGSMSDQAFACSASSVESLPSASGSSTQALVRPGSPHSSISAEDRTS 649
                 ::||:||..|     |:|||.|..||||||||||||||||||||||||||||:||||||:
Mosquito   793 -----SNRDYSNCLD-----SISDQTFQHSASSVESLPSASGSSTQALVRPGSPHSSLSAEDRTT 847

  Fly   650 MASCICKAKALVDSLPNPYDKEALKFKKGDLIDVLSMNASGIWKGRCHGRVGHFKFINVEVLPE- 713
            |.. ||:|.|||||.|:|||||||:|||||:||||||||||:|:|..:||:||||||:|||||: 
Mosquito   848 MLP-ICRAIALVDSCPSPYDKEALRFKKGDIIDVLSMNASGVWRGYANGRLGHFKFISVEVLPDL 911

  Fly   714 --QRMKNSSSKTLAAGSRLANSGNGSHNGGPCSVEDLLIRIGLKEYTSVFVLNGYEDLELFKELE 776
              ..:|....| |.:..||..|       .|.|||:||:||||||||||||||||||||||||||
Mosquito   912 PTTGLKGYGGK-LVSRHRLPTS-------CPTSVEELLLRIGLKEYTSVFVLNGYEDLELFKELE 968

  Fly   777 PADLDYLGILNQEHRAKLLTAVQLLHDIE-CSDVDIPGSSSENDEA-RLNNI------------- 826
            |:|||||||.|.|||||:|.|||||||:: .||.|:.||||||||. |||::             
Mosquito   969 PSDLDYLGIGNTEHRAKILAAVQLLHDLDSTSDGDVAGSSSENDEGLRLNHVGGLGGSGVGSGNG 1033

  Fly   827 ----NMKHGASPFGRRHFPRDSGCYEGSPLPSSQ-----------------------------TP 858
                ...|..||||||||.||||||||||:||||                             .|
Mosquito  1034 SNGGGGDHQTSPFGRRHFTRDSGCYEGSPVPSSQGSHNSHSYQQQLHHLQQQHQQQLQSHNNGQP 1098

  Fly   859 TQAVN-------------------------STDESNSLDDVVTKCSSEIMKRVESARR------- 891
            .|.:.                         |.:|:|:||.||.:||:||:||||||||       
Mosquito  1099 LQPLQQQQQPHGNMATLMGTHHHHLHHHHLSDNETNNLDSVVAQCSNEILKRVESARRYNGTTER 1163

  Fly   892 --CKDNPFKTTLPGGGRLGKKS--------FLGGNGLMADDTLTRGGLSEKSSDSGVSSSSLSSG 946
              .|....:|....||.||...        .:||.|:....  :.|.||||||||||||||||||
Mosquito  1164 GSSKTMNSRTMAKKGGLLGGGGSDGSGGMVMVGGGGVTGGS--SGGALSEKSSDSGVSSSSLSSG 1226

  Fly   947 PLKSS 951
            |.|.|
Mosquito  1227 PAKGS 1231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKIPNP_001262827.1 SAM_Samd5 4..65 CDD:188926 55/60 (92%)
SH3 657..710 CDD:473055 40/52 (77%)
SAM_superfamily 742..800 CDD:472832 49/57 (86%)
SKIPXP_061496559.1 None

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