DRSC/TRiP Functional Genomics Resources

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Protein Alignment how and AT5G51300

DIOPT Version :10

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_199943.1 Gene:AT5G51300 / 835204 AraportID:AT5G51300 Length:804 Species:Arabidopsis thaliana


Alignment Length:339 Identity:94/339 - (27%)
Similarity:148/339 - (43%) Gaps:79/339 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 QQQQSTQSIADYLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRASLFQINGVKKEPLTLPEPE 131
            |:..|.:.:.|.:...:..|:..|.     ..:.|...|.||::         :||.|...|..:
plant   185 QRSPSPEPVYDNMGIRINTREYRAR-----ERLNRERQEIIAQI---------IKKNPAFKPPAD 235

  Fly   132 GSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSM---RDKKKEDAN 193
            .....:::|:::|::|.|.:||:|.|:||||.|.|::|:|||.||::|||||:   |.::|:|..
plant   236 YRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLK 300

  Fly   194 RGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGT 258
            .....    ::|||||:..|..|     .|..|...|:|||.|..|..:|.|::||.|||.:|||
plant   301 YDPSE----NEDLHVLVEAETQE-----ALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNGT 356

  Fly   259 YRD---------------------TTAKSVAAFSCVGSASYLYPAV-C----------DEEWRRL 291
            .||                     .|.||.......|...  :|.: |          |:|::..
plant   357 IRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGG--HPTIDCPVKGTTGKKMDDEYQNF 419

  Fly   292 VA-----ASDSRLLTSTGL---PGLAAQIRAPAAAPLGAPLILNPRM-TVPTTAASILSAQAAPT 347
            :|     ..:|.|..|..|   ||.:.. ..|.|...|.....:|.: :.||         ..|:
plant   420 LAELGGTVPESSLKQSATLALGPGSSGS-NPPWANNAGNGASAHPGLGSTPT---------KPPS 474

  Fly   348 AAFDQTGHGMIFAP 361
            ..:|:|...:.|.|
plant   475 KEYDETNLYIGFLP 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..122 CDD:435414 7/46 (15%)
KH-I_HOW 132..236 CDD:411894 41/106 (39%)
AT5G51300NP_199943.1 MSL5 <157..360 CDD:227503 67/197 (34%)
KH-I_BBP 240..333 CDD:411805 40/101 (40%)
PTZ00368 <363..405 CDD:173561 6/43 (14%)
PABP-1234 <481..673 CDD:130689 2/8 (25%)
RRM 481..556 CDD:440488 2/8 (25%)

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