DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment how and khdrbs2

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001072215.1 Gene:khdrbs2 / 779662 XenbaseID:XB-GENE-490722 Length:345 Species:Xenopus tropicalis


Alignment Length:374 Identity:115/374 - (30%)
Similarity:176/374 - (47%) Gaps:84/374 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 YLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRASLFQINGVKKEPLTLPEPEGSVVTMNEKVY 142
            ||.:|:.::..|.  |: |.|..|||||||.:.:.|.......:|:.|.:...:.  :.::|:|.
 Frog     6 YLPELMAEKDSLD--PS-FVHAMRLLDEEIVKFQDSEGNKEDGEKKYLDIISNKN
--IKLSERVL 65

  Fly   143 VPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANR--GKPNWEHLSDD 205
            :||:::|.|||||::|||||.:.|:|::|||.|:.:.||||||||.||:..|  .:....||||:
 Frog    66 IPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDE 130

  Fly   206 LHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVAAF 270
            ||||:.|......|..:::.|:.|::|.|||  :..||:::.||.||:.:||:......|.... 
 Frog   131 LHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGSDDSERGKGTRG- 192

  Fly   271 SCVGSASYLYPAVCDEEWRRL-VAASDSRL---LTSTGLPGLAAQIRAPAAAPLGAPLILNPRMT 331
                              |.: |.::.||.   :.|...||..      |:|..|||:   .|.|
 Frog   193 ------------------RGIRVPSTPSRNRGGVISPAFPGRG------ASATRGAPI---TRGT 230

  Fly   332 VPTTAASILS--AQAAPTA------------AFDQTGHGMIFA-PYDYANYAALAGN-----PLL 376
            :.|.|..|.:  |:||||.            .:|..|:...|. .||..:|.....|     ..:
 Frog   231 ISTVARGIPTPRAKAAPTTPGYRLPPPLTIETYDDYGYDDGFGEDYDEQSYDIYENNYNSQTQSV 295

  Fly   377 TEYADHS--------------------GAIK---QQRRLATNREHPYQR 402
            :||.|:.                    ..:|   |:...|..|||||.|
 Frog   296 SEYYDYEHGTNEESYNHYEQEEWSKSRSTLKAPLQRPARAGYREHPYGR 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 15/44 (34%)
SF1_like-KH 139..260 CDD:239088 56/122 (46%)
khdrbs2NP_001072215.1 Qua1 5..57 CDD:374463 17/53 (32%)
SF1_like-KH 61..180 CDD:239088 54/120 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..224 12/70 (17%)
Sam68-YY 263..317 CDD:374636 10/53 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 321..345 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.