DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment how and Khdrbs3

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_071585.2 Gene:Khdrbs3 / 64015 RGDID:620921 Length:346 Species:Rattus norvegicus


Alignment Length:354 Identity:106/354 - (29%)
Similarity:162/354 - (45%) Gaps:45/354 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 YLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRASLFQINGVKKEPLTLPEPEGSVVTMNEKVY 142
            ||.:|:.::..|.  |: |||..||::.||.:     ||....|.|...:.......:.:.:||.
  Rat     5 YLPELMAEKDSLD--PS-FTHALRLVNREIEK-----FQKGEAKDEEKYIDVVINKNMKLGQKVL 61

  Fly   143 VPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANR--GKPNWEHLSDD 205
            :||::.|.|||||::|||||.:.|:|::||..|:.:.||||||||.||:..|  |:..:.||:||
  Rat    62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDD 126

  Fly   206 LHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVAAF 270
            |||||.|......|..::..|:.|::|.|:|  :..||:::.||.||..:||...:.....|...
  Rat   127 LHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSENADVPVVRGK 189

  Fly   271 SCVGSASYLYPAVCDEE---WRRLVAASDSRLLTSTGLPGLAAQIRAPAAAPLGAPLILNPRMT- 331
            |.:.:.....||:....   ..|.||....|   .|..|......|.|.:...|   :|.||.. 
  Rat   190 STLRTRGVTTPAITRGRGGVTARPVAVGVPR---GTPTPRGVLSTRGPVSRGRG---LLTPRARG 248

  Fly   332 VPTTAASILSAQAAPTAAFDQT--------GHGMIFAPYDYANYAALAGNPLLT--EYADHSGAI 386
            ||.|     ..:..|.....:|        |:...:....|.:|......|..:  :|.|:...:
  Rat   249 VPPT-----GYRPPPPPPTQETYGEYDYDDGYSTAYDDQSYDSYDNSYSTPAQSGADYYDYGHGL 308

  Fly   387 KQQ------RRLATNREH--PYQRATVGV 407
            .::      :...||..|  |..|...||
  Rat   309 GEEAYDSYGQEDWTNSRHKAPSARTAKGV 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 15/44 (34%)
SF1_like-KH 139..260 CDD:239088 56/122 (46%)
Khdrbs3NP_071585.2 Involved in homodimerization. /evidence=ECO:0000250|UniProtKB:O75525 1..160 64/164 (39%)
Qua1 4..53 CDD:406639 16/55 (29%)
KH-I_KHDRBS3 48..160 CDD:411898 48/113 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..268 17/66 (26%)
Sam68-YY 266..320 CDD:406871 6/53 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 320..346 7/18 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.