DRSC/TRiP Functional Genomics Resources

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Protein Alignment how and Qk

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_038942853.1 Gene:Qk / 499022 RGDID:1584886 Length:341 Species:Rattus norvegicus


Alignment Length:352 Identity:174/352 - (49%)
Similarity:220/352 - (62%) Gaps:43/352 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 QQQQSTQSIADYLAQLLKDRKQLAAFPN---VFTHVERLLDEEIARVRASLFQ--ING-VKKEPL 125
            :.::..:...|||.||:.|:|.:::.||   :|.|:||||||||:|||..::.  :|| .:|...
  Rat     6 ETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRSA 70

  Fly   126 TLPEPEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKE 190
            .||:..|.:|.:.||:||||:|:||||||||||||||:||||||.||||||||||||||||||||
  Rat    71 ELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKE 135

  Fly   191 DANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAII 255
            :.||||||||||::||||||||||.:|||.:||.:||.||:|||||.|||||.|||.|||||||:
  Rat   136 EQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200

  Fly   256 NGTYRDTTAKSVA-AFSCVGSASYLYPAVCDEEWRRLVAASDSRLLTSTG--LPGLAAQIRAPA- 316
            ||||||...||.| |||...:|.                 :..|::|...  ||  .|.:|.|. 
  Rat   201 NGTYRDANIKSPALAFSLAATAQ-----------------AAPRIITGPAPVLP--PAALRTPTP 246

  Fly   317 AAPLGAPLILNPRMTVPTTAASILSAQAAPTAAFDQTG--HGMIFAPYDYANYAALAGNPLLTEY 379
            |.|...|||...:..|      :.:....||||....|  .|:|:.||:|.  ..||....:.||
  Rat   247 AGPTIMPLIRQIQTAV------MPNGTPHPTAAIVPPGPEAGLIYTPYEYP--YTLAPATSILEY 303

  Fly   380 ----ADHSGAIKQQRRLATNREHPYQR 402
                :...||:..:.|....|.|||||
  Rat   304 PIEPSGVLGAVATKVRRHDMRVHPYQR 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 24/53 (45%)
SF1_like-KH 139..260 CDD:239088 99/120 (83%)
QkXP_038942853.1 STAR_dimer 10..66 CDD:406848 24/55 (44%)
KH-I_Hqk 81..183 CDD:411893 81/101 (80%)
PHA03247 <211..314 CDD:223021 34/129 (26%)
Quaking_NLS 312..341 CDD:406855 9/19 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4791
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 289 1.000 Inparanoid score I2723
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1565749at2759
OrthoFinder 1 1.000 - - FOG0001806
OrthoInspector 1 1.000 - - otm44594
orthoMCL 1 0.900 - - OOG6_104884
Panther 1 1.100 - - O PTHR11208
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1339
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.970

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