DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment how and vamp-7

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_500232.3 Gene:vamp-7 / 177041 WormBaseID:WBGene00022077 Length:261 Species:Caenorhabditis elegans


Alignment Length:66 Identity:15/66 - (22%)
Similarity:24/66 - (36%) Gaps:26/66 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 PQQQQQSTQSI---ADYLAQLLKDRKQLAAFPNVFTHVERLLDE-----------EIARVRASLF 115
            |..|||....|   .|.:.|::.|            :|||:::.           |..|..|:.|
 Worm   165 PTAQQQRMIDIRRQVDDVRQVMAD------------NVERIMERGERLENMENRTEALRTSATSF 217

  Fly   116 Q 116
            :
 Worm   218 K 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 11/56 (20%)
SF1_like-KH 139..260 CDD:239088
vamp-7NP_500232.3 Synaptobrevin 168..256 CDD:366387 14/63 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.