DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment how and Khdrbs2

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_573498.1 Gene:Khdrbs2 / 170771 MGIID:2159649 Length:349 Species:Mus musculus


Alignment Length:384 Identity:113/384 - (29%)
Similarity:169/384 - (44%) Gaps:100/384 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 YLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRASLFQINGVK--KEPLTLPEPEGSVVTMNEK 140
            ||.:|:.::..|.  |: |.|..|||.|||.:.:.|    :|.|  :|...|.......:.::|:
Mouse     6 YLPELMAEKDSLD--PS-FVHASRLLAEEIEKFQGS----DGKKEDEEKKYLDVISNKNIKLSER 63

  Fly   141 VYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANR--GKPNWEHLS 203
            |.:||:::|.|||||::|||||.:.|:|::|||.|:.:.||||||||.||:..|  |:..:.|||
Mouse    64 VLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLS 128

  Fly   204 DDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVA 268
            |:|||||.|......|..:::.|:.|::|.|||  :..||:::.||.||:.:||:......:.:.
Mouse   129 DELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGSEESGRGRGIR 191

  Fly   269 AFSCVGSASYLYPAVCDEEWRRLVAASDSRLLTSTGLPGLAAQIRAPAAAPLGAPLILNPRMT-- 331
            ....                 |:...:.||        |....:..|.....|   :|.||.|  
Mouse   192 GRGI-----------------RITPTAPSR--------GRGGAVPPPPPPGRG---VLTPRGTTV 228

  Fly   332 -------------VPTT----AASILSAQAAPTAAFD-------QTGHGMIFAPYDYANYAALAG 372
                         |||.    .|::...:|.|..|.|       ..|:|   ..||...|.|. .
Mouse   229 TRGALPVPPIARGVPTPRARGTAAVPGYRAPPPPAHDAYEEYGYDDGYG---GEYDDQTYEAY-D 289

  Fly   373 NPLLT------EYADHSGAIKQQ-------RRLATN----------------REHPYQR 402
            |..:|      ||.|:...:.:.       ...||.                |||||.|
Mouse   290 NSYVTPTQSVPEYYDYGHGVNEDAYDSYAPEEWATTRSSLKAPPPRSARGGYREHPYGR 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 16/46 (35%)
SF1_like-KH 139..260 CDD:239088 58/122 (48%)
Khdrbs2NP_573498.1 Qua1 6..57 CDD:292891 18/57 (32%)
SF1_like-KH 61..180 CDD:239088 56/120 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..263 16/109 (15%)
Sam68-YY 267..321 CDD:293176 11/57 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 321..349 8/28 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.