DRSC/TRiP Functional Genomics Resources

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Protein Alignment how and Khdrbs3

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_034288.2 Gene:Khdrbs3 / 13992 MGIID:1313312 Length:346 Species:Mus musculus


Alignment Length:354 Identity:107/354 - (30%)
Similarity:162/354 - (45%) Gaps:45/354 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 YLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRASLFQINGVKKEPLTLPEPEGSVVTMNEKVY 142
            ||.:|:.::..|.  |: |||..||::.||.:     ||....|:|...:.......:.:.:||.
Mouse     5 YLPELMAEKDSLD--PS-FTHALRLVNREIEK-----FQKGEGKEEEKYIDVVINKNMKLGQKVL 61

  Fly   143 VPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANR--GKPNWEHLSDD 205
            :||::.|.|||||::|||||.:.|:|::||..|:.:.||||||||.||:..|  |:..:.||:||
Mouse    62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDD 126

  Fly   206 LHVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYRDTTAKSVAAF 270
            |||||.|......|..::..|:.|::|.|:|  :..||:::.||.||..:||...:.....|...
Mouse   127 LHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSENADVPVVRGK 189

  Fly   271 SCVGSASYLYPAVCDEE---WRRLVAASDSRLLTSTGLPGLAAQIRAPAAAPLGAPLILNPRMT- 331
            |.:.:.....||:....   ..|.||....|   .|..|......|.|.:...|   :|.||.. 
Mouse   190 STLRTRGVTTPAITRGRGGVTARPVAVGVPR---GTPTPRGVLSTRGPVSRGRG---LLTPRARG 248

  Fly   332 VPTTAASILSAQAAPTAAFDQT--------GHGMIFAPYDYANYAALAGNPL--LTEYADHSGAI 386
            ||.|     ..:..|.....:|        |:|..:....|.:|......|.  ..:|.|:...:
Mouse   249 VPPT-----GYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTPAQSAADYYDYGHGL 308

  Fly   387 KQQ------RRLATNREH--PYQRATVGV 407
            .:.      :...||..|  |..|...||
Mouse   309 SEDAYDSYGQEEWTNSRHKAPSARTAKGV 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 15/44 (34%)
SF1_like-KH 139..260 CDD:239088 56/122 (46%)
Khdrbs3NP_034288.2 Involved in homodimerization. /evidence=ECO:0000250|UniProtKB:O75525 1..160 64/164 (39%)
Qua1 5..53 CDD:292891 16/55 (29%)
SF1_like-KH 58..177 CDD:239088 55/120 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..266 16/64 (25%)
Sam68-YY 266..320 CDD:293176 7/53 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 317..346 7/21 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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