DRSC/TRiP Functional Genomics Resources

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Protein Alignment how and qki

DIOPT Version :9

Sequence 1:NP_001262822.1 Gene:how / 42596 FlyBaseID:FBgn0264491 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_012818008.1 Gene:qki / 100038174 XenbaseID:XB-GENE-486525 Length:381 Species:Xenopus tropicalis


Alignment Length:367 Identity:176/367 - (47%)
Similarity:219/367 - (59%) Gaps:57/367 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 QQQQSTQSIADYLAQLLKDRKQLAAFPN---VFTHVERLLDEEIARVRASLFQ--INGVKKEPLT 126
            :.::..:...|||.||:.|:|.:::.||   :|||:||||||||:|||..::.  :||...|..|
 Frog    30 ETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFTHLERLLDEEISRVRKDMYNDTLNGSNNEKRT 94

  Fly   127 --LPEPEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKK- 188
              ||:..|.:|.:.||:||||:|:||||||||||||||:||||||.|||||||||||||||||| 
 Frog    95 SELPDGIGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK 159

  Fly   189 --------------KEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAE 239
                          ||:.||||||||||::||||||||||.:|||.:||.:||.||:|||||.||
 Frog   160 AVTNILECSILALNKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAE 224

  Fly   240 GEDELKKRQLMELAIINGTYRDTTAKSVA-AFSCVGSASYLYPAVCDEEWRRLVAASDSRLLTST 303
            |||.|||.|||||||:||||||...||.| |||...:                  |...|::|..
 Frog   225 GEDSLKKMQLMELAILNGTYRDANLKSPALAFSLAAT------------------AQAPRIITGP 271

  Fly   304 G--LPGLAAQIRAPA-AAPLGAPLILNPRMTVPTTAASILSAQAAPTAAF--DQTGHGMIFAPYD 363
            .  ||  .|.:|.|. |.|...|||...:     |||.:.:....|||..  .....|:|:.||:
 Frog   272 APVLP--PAALRTPTPAGPTLMPLIRQIQ-----TAAVMPNGTTHPTATLMPQAPEAGLIYTPYE 329

  Fly   364 YANYAALAGNPLLTEYADHS---GAIKQQRRLATNREHPYQR 402
            |. |.......:|....|.|   ||:..:.|....|.|||||
 Frog   330 YP-YTLAPATSILEYPIDTSGVLGAVATKVRRHDMRVHPYQR 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
howNP_001262822.1 STAR_dimer 75..123 CDD:293152 25/52 (48%)
SF1_like-KH 139..260 CDD:239088 99/135 (73%)
qkiXP_012818008.1 STAR_dimer 34..92 CDD:293152 25/57 (44%)
SF1_like-KH 108..245 CDD:239088 99/136 (73%)
PRK04654 179..346 CDD:135173 86/192 (45%)
Quaking_NLS 354..381 CDD:293159 7/17 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4864
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 274 1.000 Inparanoid score I2906
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1565749at2759
OrthoFinder 1 1.000 - - FOG0001806
OrthoInspector 1 1.000 - - oto102492
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3450
SonicParanoid 1 1.000 - - X1339
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.090

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